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German Tischler's Projects

alignalt icon alignalt

Program aligning contigs to reference regions for detecting matching stretches

alternatives icon alternatives

Detection of alternatives by local assembly of short reads

bambamc icon bambamc

lightweight C implementation of name collating BAM file input and BAM file output

biobambam2 icon biobambam2

Tools for early stage alignment file processing

bwa icon bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

bwtb3m icon bwtb3m

Burrows Wheeler Transform By Balanced Block Merging

canu icon canu

A single molecule sequence assembler for genomes large and small.

daccord icon daccord

d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly

daligner icon daligner

Find all significant local alignments between reads

io_lib icon io_lib

Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats.

lastools icon lastools

Tools for processing DALIGNER .las files

libmaus2 icon libmaus2

collection of data structures and algorithms

multiqc icon multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

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