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integrate-msigdb

Fork of https://github.com/dhimmel/integrate - Focus on MSigDB

interpret-compression

Assigning biological knowledge to compressed gene expression features

interstellar_project

This repository contains the pipelines used to analyze the data sets from the Interstellar collaboration.

jump-datasets

Images and other data from the JUMP Cell Painting Consortium

jump-single-cell

Single cell analysis of the JUMP Cell Painting consortium data

keras-dcgan

Keras implementation of Deep Convolutional Generative Adversarial Networks

keras-feedstock

A conda-smithy repository for keras.

keras_gan

Experimenting with Generative Adversarial Networks using the Keras library in Python

latent-spaces

Donuts

lincs-cell-painting

Processed Cell Painting Data for the LINCS Drug Repurposing Project

lincs-profiling-comparison

Analyzing and comparing signal found in different profiling technologies

machine-learning

Machine learning for Project Cognoma

mitocheck_data

All information regarding the download and processing of Mitocheck data from IDR study with accession idr0013 (screenA).

ml-workers

Machine Learning Workers for Project Cognoma

mnist_td-vae

Temporal Difference Variational Auto-Encoder (TD-VAE) (Implementation in PyTorch)

msdse

multiassayexperiment

Bioconductor package for management of multi-assay data

multiple-myeloma-classifier

Multi-class KRAS/NRAS Classifier for Multiple Myeloma

nf1_cellpainting_data

This repository contains all the modules to perform image-based analysis with CellProfiler on NF1 Schwann cell data.

nf1_inactivation

Using Machine Learning to Identify Glioblastoma patients with NF1 inactivation

nf1_schwanncell_data

Data processing for NF1 Schwann cell pilot images.

nf1_schwanncell_data_analysis

onboarding

Written lab policies and standards often read when joining the lab!

open-science-rules

Collaboratively written manuscript discussing Ten Simple Rules for Enabling Open Science in Biomedical Research

openpbta-manuscript

The manuscript repository for the Open Pediatric Brain Tumor Atlas Project

opticalpooledscreens

Examples and code for optical pooled screens

organelles

Scraping Gene Ontology for standardized organelle terms and IDs

pancancer

Building classifiers using cancer transcriptomes across 33 different cancer-types

pancan_viz

Visualizing TCGA pancancer datasets

pathway-mapper

An interactive and collaborative graphical curation tool for cancer pathways