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8400ml-ws

Hands on Workshop for the 8400 course

backterm

BackTerm is a command-line tool for generating random terminal backgrounds using the Unsplash API. Customizable options include color, texture, and resolution. Default settings generate dark, abstract, patterned images. Available under the MIT License.

bioinfo_with_python

Functions and tools to support bioinformatics analysis jobs with python

cfsimu

Cell free simulation using Wgsim

col7a1

complabngs

Computational Lab in Next Generation Sequencing and Genomics Data Analysis - TAU 0411358701

crisprgarray

Tool to generate crispr guide arrays

densecnvkit

Updated functions for denseCNV - Copy number variant detection from targeted DNA sequencing

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

dotfiles

Personal config files

fragcna

Fragment aware Copy Number Analysis

gbrowse

the Generic Genome Browser

hadasvolk.github.io

hoobgender

Fetal gender determination using the male-specific region of the human Y chromosome and unsupervised mixture of gaussians

myscreen

Development version of MyScreen

smk_align

a simple snakemake to produce PE alignments and get basic stats

somaticserum

Somatic Variant Detection in Cell-Free Tumor DNA Using Deep Learning Sequence Read Classification Approach

truncatedanalysis

Program to analyze insertion locations of construct in foregin genome