hammerlab / bespoke.js Goto Github PK

GenomeRange:

var range = {contig: 'chr17', start: 1234, stop: 4567};

ContigInterval:

var range = new ContigInterval('chr17', 1234, 4567);

Some methods in this repo expect one, others expect the other. There's not much rhyme or reason to it. They should all use a single representation of ranges.

While I like bespoke.js, it's already taken by a popular slideshow library.

Suggestions:

• dewigec - deal with genomics crap
• lopagen - load and parse genomic data

Most data loaders (e.g. bam.js) take in a RemoteFile instance from which they load their data. This provides lots of flexibility for testing, but it's not especially convenient for end users.

Any public method/constructor which takes a RemoteFile should also accept a string containing a URL.