hapifhir / hapi-fhir-jpaserver-starter Goto Github PK
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License: Apache License 2.0
docker-compose up -d --build
fails in the 2nd stage when building HAPI FHIR Structures - FHIR R4 5.0.0-SNAPSHOT [11/53]
[INFO] ------------------
[ERROR] /tmp/hapi-fhir/hapi-fhir-structures-r4/src/test/java/ca/uhn/fhir/rest/client/GenericClientR4Test.java:[1604,85] error: cannot find symbol
symbol: variable TimeZone
location: class GenericClientR4Test
I've tried both master
and rel_5_0_0
. Running Docker Desktop for Mac
v2.2.0 on OS X Mojave, Docker version 19.03.8, docker-compose version 1.25.4.
It'd be nice to publish hapi-fhir-jpaserver-starter to maven central. This would allow using it without having to clone the project. Thanks!
I am able to run the server locally using mvn jetty:run
, but I get the following error when trying to run the server in docker:
2019-07-29 17:18:28.232:WARN:oejw.WebAppContext:main: Failed startup of context o.e.j.w.WebAppContext@5b275dab{hapi-fhir-jpaserver,/hapi-fhir-jpaserver,file:///tmp/jetty-0.0.0.0-8080-hapi-fhir-jpaserver.war-_hapi-fhir-jpaserver-any-823365860806749615.dir/webapp/,UNAVAILABLE}{/hapi-fhir-jpaserver.war}
java.lang.IllegalStateException: Duplicate fragment name: spring_web for
jar:file:///tmp/jetty-0.0.0.0-8080-hapi-fhir-jpaserver.war-_hapi-fhir-jpaserver-any-823365860806749615.dir/webapp/WEB-INF/lib/spring-web-5.1.3.RELEASE.jar!/META-INF/web-fragment.xml and
jar:file:///tmp/jetty-0.0.0.0-8080-hapi-fhir-jpaserver.war-_hapi-fhir-jpaserver-any-823365860806749615.dir/webapp/WEB-INF/lib/spring-web-5.1.6.RELEASE.jar!/META-INF/web-fragment.xml
At this point trying to access http://localhost:8080/hapi-fhir-jpaserver/
gives a 503. Below is a complete log:
ᐅ git status
On branch master
Your branch is up to date with 'origin/master'.
nothing to commit, working tree clean
ᐅ ./build-docker-image.sh
<snipped for brevity>
[INFO] BUILD SUCCESS
<snipped for brevity>
Successfully built 8d6e7a0f4a52
Successfully tagged hapi-fhir/hapi-fhir-jpaserver-starter:latest
ᐅ docker run -p 8080:8080 hapi-fhir/hapi-fhir-jpaserver-starter:latest
2019-07-29 17:25:58.836:INFO::main: Logging initialized @347ms to org.eclipse.jetty.util.log.StdErrLog
2019-07-29 17:25:59.266:INFO:oejs.Server:main: jetty-9.4.18.v20190429; built: 2019-04-29T20:42:08.989Z; git: e1bc35120a6617ee3df052294e433f3a25ce7097; jvm 1.8.0_212-b04
2019-07-29 17:25:59.302:INFO:oejdp.ScanningAppProvider:main: Deployment monitor [file:///var/lib/jetty/webapps/] at interval 1
2019-07-29 17:26:01.307:WARN:oejw.WebAppContext:main: Failed startup of context o.e.j.w.WebAppContext@5b275dab{hapi-fhir-jpaserver,/hapi-fhir-jpaserver,file:///tmp/jetty-0.0.0.0-8080-hapi-fhir-jpaserver.war-_hapi-fhir-jpaserver-any-960398556907507961.dir/webapp/,UNAVAILABLE}{/hapi-fhir-jpaserver.war}
java.lang.IllegalStateException: Duplicate fragment name: spring_web for jar:file:///tmp/jetty-0.0.0.0-8080-hapi-fhir-jpaserver.war-_hapi-fhir-jpaserver-any-960398556907507961.dir/webapp/WEB-INF/lib/spring-web-5.1.3.RELEASE.jar!/META-INF/web-fragment.xml and jar:file:///tmp/jetty-0.0.0.0-8080-hapi-fhir-jpaserver.war-_hapi-fhir-jpaserver-any-960398556907507961.dir/webapp/WEB-INF/lib/spring-web-5.1.6.RELEASE.jar!/META-INF/web-fragment.xml
at org.eclipse.jetty.webapp.MetaData.addFragment(MetaData.java:285)
at org.eclipse.jetty.webapp.FragmentConfiguration.addWebFragments(FragmentConfiguration.java:88)
at org.eclipse.jetty.webapp.FragmentConfiguration.preConfigure(FragmentConfiguration.java:39)
at org.eclipse.jetty.webapp.WebAppContext.preConfigure(WebAppContext.java:506)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:544)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
at org.eclipse.jetty.deploy.bindings.StandardStarter.processBinding(StandardStarter.java:46)
at org.eclipse.jetty.deploy.AppLifeCycle.runBindings(AppLifeCycle.java:192)
at org.eclipse.jetty.deploy.DeploymentManager.requestAppGoal(DeploymentManager.java:502)
at org.eclipse.jetty.deploy.DeploymentManager.addApp(DeploymentManager.java:151)
at org.eclipse.jetty.deploy.providers.ScanningAppProvider.fileAdded(ScanningAppProvider.java:172)
at org.eclipse.jetty.deploy.providers.WebAppProvider.fileAdded(WebAppProvider.java:430)
at org.eclipse.jetty.deploy.providers.ScanningAppProvider$1.fileAdded(ScanningAppProvider.java:65)
at org.eclipse.jetty.util.Scanner.reportAddition(Scanner.java:610)
at org.eclipse.jetty.util.Scanner.reportDifferences(Scanner.java:529)
at org.eclipse.jetty.util.Scanner.scan(Scanner.java:392)
at org.eclipse.jetty.util.Scanner.doStart(Scanner.java:313)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
at org.eclipse.jetty.deploy.providers.ScanningAppProvider.doStart(ScanningAppProvider.java:145)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
at org.eclipse.jetty.deploy.DeploymentManager.startAppProvider(DeploymentManager.java:576)
at org.eclipse.jetty.deploy.DeploymentManager.doStart(DeploymentManager.java:238)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start(ContainerLifeCycle.java:167)
at org.eclipse.jetty.server.Server.start(Server.java:418)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart(ContainerLifeCycle.java:119)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:113)
at org.eclipse.jetty.server.Server.doStart(Server.java:382)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
at org.eclipse.jetty.xml.XmlConfiguration$1.run(XmlConfiguration.java:1572)
at org.eclipse.jetty.xml.XmlConfiguration$1.run(XmlConfiguration.java:1512)
at java.security.AccessController.doPrivileged(Native Method)
at org.eclipse.jetty.xml.XmlConfiguration.main(XmlConfiguration.java:1511)
2019-07-29 17:26:01.393:INFO:oejs.AbstractConnector:main: Started ServerConnector@27808f31{HTTP/1.1,[http/1.1]}{0.0.0.0:8080}
2019-07-29 17:26:01.394:INFO:oejs.Server:main: Started @2910ms
I've build the project and deployed this to Jetty, everything looks working, however when I try to select a date using the datetimepicker there's no response. I see the following errormessage:
Uncaught TypeError: moment.locale is not a function
at bootstrap-datetimepicker.min.js:2444
at bootstrap-datetimepicker.min.js:51
at bootstrap-datetimepicker.min.js:53
(anonymous) @ bootstrap-datetimepicker.min.js:2444
(anonymous) @ bootstrap-datetimepicker.min.js:51
(anonymous) @ bootstrap-datetimepicker.min.js:53
I've cloned the latest of this project and added an AuthInterceptor which implements IServerInterceptor. Within the interceptor, I'm currently just printing the request headers, and returning true. I intend to implement custom authentication using JWT within this interceptor once I'm able to get the Authorization header value. Here's my implementation of the incomingRequestPreProcessed method:
@Override
public boolean incomingRequestPreProcessed(HttpServletRequest theRequest, HttpServletResponse theResponse) {
System.out.println("Executing incomingRequestPreProcessed");
Enumeration headerNames = theRequest.getHeaderNames();
while (headerNames.hasMoreElements()) {
String key = (String) headerNames.nextElement();
String value = theRequest.getHeader(key);
System.out.println(key + " : " + value);
}
String authHeader = theRequest.getHeader("Authorization");
System.out.println(authHeader); //prints null?
return true;
}
My AuthInterceptor has been registered in JpaRestfulServer as shown below:
AuthInterceptor authInterceptor = new AuthInterceptor();
this.registerInterceptor(authInterceptor);
I then run the project using mvn jetty:run
and attempt to make a request to the base URI at http://localhost:8080/hapi-fhir-jpaserver/ using Postman/Curl, etc. with a basic Authorization header set. What I observe is that the Authorization header is null and only the following header values are present in the incomingRequestPreProcessed method, none of which were explicitly set in my request:
User-Agent : HAPI-FHIR/3.7.0 (FHIR Client; FHIR 3.0.1/DSTU3; apache)
Accept-Charset : utf-8
Connection : keep-alive
Host : localhost:8080
Accept-Encoding : gzip
Accept : application/fhir+xml;q=1.0, application/fhir+json;q=1.0, application/xml+fhir;q=0.9, application/json+fhir;q=0.9
It appears that there's some component within the hapi-fhir system that's stripping off my request headers? Is this the intended behavior, or is there some other approach I should be taking to accomplish my use case of implementing a custom authentication provider?
Hi :)
I've been trying to have the server give me the total number of results for a given search. I noticed that the Bundle I get as a response does not include the type
key which is required based on the FHIR standard:
https://www.hl7.org/fhir/bundle-definitions.html#Bundle.type
The most appropriate type appears to be "searchset". When I use _summary with all the other valid options, that's the type I get in the response.
Example of the problem:
http://hapi.fhir.org/baseR4/Media?_summary=count
gives me:
{
"resourceType": "Bundle",
"id": "9aaf1d79-4c1a-4c9c-a3db-ea5b119653b6",
"meta": {
"lastUpdated": "2020-03-16T12:02:17.484+00:00",
"tag": [
{
"system": "http://terminology.hl7.org/CodeSystem/v3-ObservationValue",
"code": "SUBSETTED",
"display": "Resource encoded in summary mode"
}
]
},
"total": 1705
}
I have created another issue here:
hapifhir/hapi-fhir#1763
I checked-out hapi-fhir r4.2.0 on my machine and built it just fine. Then I switched the hapi-fhir-jpaserver-starter pom to reference that tag instead of r4.0.0. It will not build, throwing this error:
[ERROR] Failed to execute goal on project hapi-fhir-jpaserver-starter: Could not resolve dependencies for project ca.uhn.hapi.fhir.demo:hapi-fhir-jpaserver-starter:war:4.2.0: Could not find artifact ca.uhn.hapi.fhir:hapi-fhir-jpaserver-elasticsearch:jar:4.2.0 in oss-snapshots (https://oss.sonatype.org/content/repositories/snapshots/) -> [Help 1]
Looks like the 4.1.0 wasn't released ? Thanks !
currently this project has R3 as default, as R4 is normative we should change the default to a valid R4 config.
Hi everyone,
I've been trying to figure this out.
As per http://hl7.org/fhir/valueset.html#designations
when a display value is provided inside a concept, the expansion generated will use the display provided in the valueset.
But as seen below, the server returns the long common name from loinc.
Is there something i'm missing here?
This is my valueset
{
"resourceType": "ValueSet",
"url":"http://fhir.amsclinic.net/ams/ValueSet/ams-lab-chem-loinc-codes",
"title": "AMS Laboratory Chemistry Loinc Order Codes",
"name":"ams-lab-chem-loinc-codes",
"status": "active",
"compose":{
"include":[
{
"system":"http://loinc.org",
"concept":[
{
"code":"14771-0",
"display":"FBS"
}
]
}
]
}
}
My get reuest http://fhir.amsclinic.net/ams/ValueSet/$expand?url=ams-lab-chem-loinc-codes
the response
{
"resourceType": "ValueSet",
"status": "active",
"compose": {
"include": [
{
"valueSet": [
"ams-lab-chem-loinc-codes"
]
}
]
},
"expansion": {
"identifier": "6a67bedc-a05d-4e97-ac2d-2f2f5b0ea4e9",
"timestamp": "2020-03-06T18:36:58+08:00",
"total": 16,
"contains": [
{
"system": "http://loinc.org",
"code": "14771-0",
"display": "Fasting glucose [Moles/volume] in Serum or Plasma",
"designation": [
{
"use": {
"display": "ShortName"
},
"value": "Glucose p fast SerPl-sCnc"
}
]
}
]
}
}
I'm using 4.2.0.
Any help is appreciated.
Thanks
We keep a clone of this project in our private repo and currently our builds using maven are failing unless the oss-snapshots repo configured in the pom.xml is enabled
Is this by design?
Edit: Further error detail -
[ERROR] Failed to execute goal on project zen-hapi-fhir-jpaserver-starter: Could not resolve dependencies for project com.zenconsulting.gemini:zen-hapi-fhir-jpaserver-starter:war:4.0.0: Failed to collect dependencies at ca.uhn.hapi.fhir:hapi-fhir-jpaserver-base:jar:4.0.0 -> ca.uhn.hapi.fhir:hapi-fhir-server:jar:4.0.0 -> ca.uhn.hapi.fhir:org.hl7.fhir.utilities:jar:4.0.0: Failed to read artifact descriptor for ca.uhn.hapi.fhir:org.hl7.fhir.utilities:jar:4.0.0: Could not find artifact ca.uhn.hapi.fhir:hapi-deployable-pom:pom:4.0.0-SNAPSHOT in snapshots
I have this patient http://hapi.fhir.org/baseR4/Patient?identifier=CERNER-DRMC-008010210&_pretty=true and I created this Encounter on it http://hapi.fhir.org/baseR4/Encounter/181221?_pretty=true
But I am unable to search this Encounter by internal/business Patient Identifier i.e. this does not work http://hapi.fhir.org/baseR4/Encounter?patient.identifier=CERNER-DRMC-008010210|
is there any other way to list encounters by a given Patient business Identifier
I've forked and cloned your repository and I'm trying to run it locally.
I tried to run mvn jetty:run without making any changes but got this following error:
[ERROR] Failed to execute goal org.eclipse.jetty:jetty-maven-plugin:9.4.8.v20180619:run (default-cli) on project hapi-fhir-jpaserver-starter: Failure: Address already in use: bind -> [Help 1] org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.eclipse.jetty:jetty-maven-plugin:9.4.8.v20180619:run (default-cli) on project hapi-fhir-jpaserver-starter: Failure
More info further down:
Caused by: java.net.BindException: Address already in use: bind
This led me to think it's the port (8080) which is probably used by IIS on my windows machine.
So I changed the server_address value in the hapi.properties file, but i keep getting the same error.
I've tried using many different port numbers but same result.
Is there anything else I can try?
Hi @jamesagnew, thanks for everything you do.
I tried running locally with mvn jetty:run
. However, was receiving the below error during context loading:
2019-01-17 17:31:02.319 [main] ERROR o.s.web.context.ContextLoader [ContextLoader.java:312] Context initialization failed
org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'matchResourceUrlService': Unsatisfied dependency expressed through field 'myMatchUrlService'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'matchUrlService': Unsatisfied dependency expressed through field 'mySearchParamRegistry'; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'searchParamRegistry': Unsatisfied dependency expressed through field 'myModelConfig'; nested exception is org.springframework.beans.factory.NoSuchBeanDefinitionException: No qualifying bean of type 'ca.uhn.fhir.jpa.model.entity.ModelConfig' available: expected at least 1 bean which qualifies as autowire candidate. Dependency annotations: {@org.springframework.beans.factory.annotation.Autowired(required=true)}
To resolve, I added the below to FhirServerConfig.java
@Bean
public ModelConfig modelConfig() {
return daoConfig().getModelConfig();
}
My build is fully up, and mostly working, but I am seeing this now:
" Warning!
Error: HTTP 500 Server Error: NULL not allowed for column "SEARCH_LAST_RETURNED"; SQL statement: insert into HFJ_SEARCH (CREATED, SEARCH_DELETED, EXPIRY_OR_NULL, FAILURE_CODE, FAILURE_MESSAGE, LAST_UPDATED_HIGH, LAST_UPDATED_LOW, NUM_BLOCKED, NUM_FOUND, PREFERRED_PAGE_SIZE, RESOURCE_ID, RESOURCE_TYPE, SEARCH_PARAM_MAP, SEARCH_QUERY_STRING, SEARCH_QUERY_STRING_HASH, SEARCH_TYPE, SEARCH_STATUS, TOTAL_COUNT, SEARCH_UUID, OPTLOCK_VERSION, PID) values (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?) [23502-200]"
I have no diffs in the project other than changes to some graphics files, the git pull from this project is current.
Is there something that needs to be run separately to update the tables HAPI natively uses before spinning up with "mvn jetty:run" in the hapi-fhir-jpaserver-starter directory, after a git pull updates things?
Hi,
I am getting the following runtime exception while running the project locally.
java.lang.RuntimeException: Error scanning entry org/h2/util/NetUtils2.class
I am running mvn jetty: run command. I haven't change any properties yet.
Not sure, what exactly I am doing wrong.
Thanks.
Here is the exception from terminal :
java.lang.RuntimeException: Error scanning entry org/h2/util/NetUtils2.class from jar file:///Users/xxx/.m2/repository/com/h2database/h2/1.4.200/h2-1.4.200.jar
at org.eclipse.jetty.annotations.AnnotationParser.lambda$parseJar$0 (AnnotationParser.java:883)
at java.util.TreeMap$ValueSpliterator.forEachRemaining (TreeMap.java:2890)
at java.util.stream.ReferencePipeline$Head.forEach (ReferencePipeline.java:658)
at org.eclipse.jetty.annotations.AnnotationParser.parseJar (AnnotationParser.java:875)
at org.eclipse.jetty.annotations.AnnotationParser.parse (AnnotationParser.java:839)
at org.eclipse.jetty.annotations.AnnotationConfiguration$ParserTask.call (AnnotationConfiguration.java:161)
at org.eclipse.jetty.annotations.AnnotationConfiguration$1.run (AnnotationConfiguration.java:468)
at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob (QueuedThreadPool.java:708)
at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run (QueuedThreadPool.java:626)
at java.lang.Thread.run (Thread.java:834)
Caused by: java.lang.IllegalArgumentException
at org.objectweb.asm.ClassReader. (ClassReader.java:160)
at org.objectweb.asm.ClassReader. (ClassReader.java:143)
at org.objectweb.asm.ClassReader. (ClassReader.java:418)
at org.eclipse.jetty.annotations.AnnotationParser.scanClass (AnnotationParser.java:933)
at org.eclipse.jetty.annotations.AnnotationParser.parseJarEntry (AnnotationParser.java:918)
at org.eclipse.jetty.annotations.AnnotationParser.lambda$parseJar$0 (AnnotationParser.java:879)
at java.util.TreeMap$ValueSpliterator.forEachRemaining (TreeMap.java:2890)
at java.util.stream.ReferencePipeline$Head.forEach (ReferencePipeline.java:658)
at org.eclipse.jetty.annotations.AnnotationParser.parseJar (AnnotationParser.java:875)
at org.eclipse.jetty.annotations.AnnotationParser.parse (AnnotationParser.java:839)
at org.eclipse.jetty.annotations.AnnotationConfiguration$ParserTask.call (AnnotationConfiguration.java:161)
at org.eclipse.jetty.annotations.AnnotationConfiguration$1.run (AnnotationConfiguration.java:468)
at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob (QueuedThreadPool.java:708)
at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run (QueuedThreadPool.java:626)
at java.lang.Thread.run (Thread.java:834)
hapi-fhir-jpaserver-starter v4.0 fails to upload definition by using hapi-fhir-cli v4.0 with cmd:
hapi-fhir-cli upload-definitions -t http://localhost:8080/hapi-fhir-jpaserver/fhir/ -v r4
2019-08-29 17:21:17.228 [RMI TCP Connection(2)-127.0.0.1] INFO o.s.web.context.ContextLoader [ContextLoader.java:306] Root WebApplicationContext initialized in 9801 ms
2019-08-29 17:21:17.349 [scheduledExecutorService-2] INFO c.u.f.j.s.r.BaseSearchParamRegistry [BaseSearchParamRegistry.java:311] Refreshed search parameter cache in 119ms
2019-08-29 17:21:17.548 [RMI TCP Connection(2)-127.0.0.1] INFO c.uhn.fhir.rest.server.RestfulServer [RestfulServer.java:1166] Initializing HAPI FHIR restful server running in R4 mode
2019-08-29 17:21:17.550 [RMI TCP Connection(2)-127.0.0.1] INFO c.uhn.fhir.rest.server.RestfulServer [RestfulServer.java:1545] Added 146 resource provider(s). Total 146
2019-08-29 17:21:18.008 [RMI TCP Connection(2)-127.0.0.1] INFO c.uhn.fhir.rest.server.RestfulServer [RestfulServer.java:1551] Added 3 plain provider(s). Total 3
2019-08-29 17:21:18.030 [RMI TCP Connection(2)-127.0.0.1] INFO c.uhn.fhir.rest.server.RestfulServer [RestfulServer.java:1219] A FHIR has been lit on this server
2019-08-29 17:21:18.056 [RMI TCP Connection(2)-127.0.0.1] INFO o.s.web.servlet.DispatcherServlet [FrameworkServlet.java:524] Initializing Servlet 'spring'
2019-08-29 17:21:18.756 [RMI TCP Connection(2)-127.0.0.1] INFO o.s.web.servlet.DispatcherServlet [FrameworkServlet.java:546] Completed initialization in 700 ms
[2019-08-29 05:21:18,771] Artifact hapi-fhir-jpaserver-starter:war: Artifact is deployed successfully
[2019-08-29 05:21:18,771] Artifact hapi-fhir-jpaserver-starter:war: Deploy took 19,553 milliseconds
hapi-fhir-cli upload-definitions -t http://localhost:8080/hapi-fhir-jpaserver/fhir/ -v r4
Detected Java version : 1.8.0_121
------------------------------------------------------------
2019-08-29 17:00:24.443 [main] INFO c.u.f.c.ValidationDataUploader Uploading definitions to server
2019-08-29 17:00:26.432 [main] INFO c.u.f.c.ValidationDataUploader Uploading ValueSet 1/1167 : CodeSystem/example (2164 bytes}
2019-08-29 17:00:28.235 [main] INFO c.u.f.c.ValidationDataUploader - Got ID: http://localhost:8080/hapi-fhir-jpaserver/fhir/CodeSystem/example/_history/1
2019-08-29 17:00:28.239 [main] INFO c.u.f.c.ValidationDataUploader Uploading ValueSet 2/1167 : CodeSystem/nhin-purposeofuse (4755 bytes}
2019-08-29 17:00:28.304 [main] INFO c.u.f.c.Vali
2019-08-29 17:01:12.608 [main] INFO c.u.f.c.ValidationDataUploader Uploading v2-tables ValueSet 824/852 : CodeSystem/v2-0548
2019-08-29 17:01:12.623 [main] INFO c.u.f.c.ValidationDataUploader Uploading v2-tables ValueSet 825/852 : CodeSystem/v2-0309
2019-08-29 17:01:12.634 [main] INFO c.u.f.c.ValidationDataUploader Uploading v2-tables ValueSet 826/852 : CodeSystem/v2-0540
2019-08-29 17:01:12.651 [main] INFO c.u.f.c.ValidationDataUploader Uploading v2-tables ValueSet 827/852 : CodeSystem/v2-0301
2019-08-29 17:01:12.777 [main] ERROR ca.uhn.fhir.cli.App Error during execution:
ca.uhn.fhir.rest.server.exceptions.InternalErrorException: HTTP 500 Internal Server Error: Failed to call access method: org.springframework.dao.InvalidDataAccessApiUsageException: Value exceeds maximum length (500): 606; nested exception is java.lang.IllegalArgumentException: Value exceeds maximum length (500): 606
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at ca.uhn.fhir.rest.server.exceptions.BaseServerResponseException.newInstance(BaseServerResponseException.java:302)
at ca.uhn.fhir.rest.client.impl.BaseClient.invokeClient(BaseClient.java:351)
at ca.uhn.fhir.rest.client.impl.GenericClient$BaseClientExecutable.invoke(GenericClient.java:431)
at ca.uhn.fhir.rest.client.impl.GenericClient$UpdateInternal.execute(GenericClient.java:2100)
at ca.uhn.fhir.rest.client.impl.GenericClient$UpdateInternal.execute(GenericClient.java:2046)
at ca.uhn.fhir.cli.ValidationDataUploader.uploadDefinitionsR4(ValidationDataUploader.java:442)
at ca.uhn.fhir.cli.ValidationDataUploader.run(ValidationDataUploader.java:164)
at ca.uhn.fhir.cli.BaseApp.run(BaseApp.java:251)
at ca.uhn.fhir.cli.App.main(App.java:43)
2019-08-29 17:01:12.779 [Thread-0] INFO ca.uhn.fhir.cli.App HAPI FHIR is shutting down...
2019-08-29 17:01:12.734 [http-bio-8080-exec-3] ERROR c.u.f.r.s.i.ExceptionHandlingInterceptor [ExceptionHandlingInterceptor.java:136] Failure during REST processing
ca.uhn.fhir.rest.server.exceptions.InternalErrorException: Failed to call access method: org.springframework.dao.InvalidDataAccessApiUsageException: Value exceeds maximum length (500): 606; nested exception is java.lang.IllegalArgumentException: Value exceeds maximum length (500): 606
at ca.uhn.fhir.rest.server.method.BaseMethodBinding.invokeServerMethod(BaseMethodBinding.java:244)
at ca.uhn.fhir.rest.server.method.BaseOutcomeReturningMethodBinding.invokeServer(BaseOutcomeReturningMethodBinding.java:150)
at ca.uhn.fhir.rest.server.method.UpdateMethodBinding.invokeServer(UpdateMethodBinding.java:44)
at ca.uhn.fhir.rest.server.RestfulServer.handleRequest(RestfulServer.java:998)
at ca.uhn.fhir.rest.server.RestfulServer.doPut(RestfulServer.java:351)
at ca.uhn.fhir.rest.server.RestfulServer.service(RestfulServer.java:1659)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:731)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:218)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:110)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:506)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:169)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:962)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:445)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1115)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:637)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:318)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.reflect.InvocationTargetException: null
at sun.reflect.GeneratedMethodAccessor130.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at ca.uhn.fhir.rest.server.method.BaseMethodBinding.invokeServerMethod(BaseMethodBinding.java:239)
... 26 common frames omitted
Caused by: org.springframework.dao.InvalidDataAccessApiUsageException: Value exceeds maximum length (500): 606; nested exception is java.lang.IllegalArgumentException: Value exceeds maximum length (500): 606
at org.springframework.orm.jpa.EntityManagerFactoryUtils.convertJpaAccessExceptionIfPossible(EntityManagerFactoryUtils.java:373)
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.translateExceptionIfPossible(HibernateJpaDialect.java:255)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.translateExceptionIfPossible(AbstractEntityManagerFactoryBean.java:527)
at org.springframework.dao.support.ChainedPersistenceExceptionTranslator.translateExceptionIfPossible(ChainedPersistenceExceptionTranslator.java:61)
at org.springframework.dao.support.DataAccessUtils.translateIfNecessary(DataAccessUtils.java:242)
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:153)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186)
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:295)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:98)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:212)
at com.sun.proxy.$Proxy158.update(Unknown Source)
at ca.uhn.fhir.jpa.provider.r4.JpaResourceProviderR4.update(JpaResourceProviderR4.java:155)
... 30 common frames omitted
Caused by: java.lang.IllegalArgumentException: Value exceeds maximum length (500): 606
at ca.uhn.fhir.util.ValidateUtil.isNotTooLongOrThrowIllegalArgument(ValidateUtil.java:74)
at ca.uhn.fhir.jpa.entity.TermConceptDesignation.setValue(TermConceptDesignation.java:116)
at ca.uhn.fhir.jpa.term.BaseHapiTerminologySvcImpl.toTermConcept(BaseHapiTerminologySvcImpl.java:1350)
at ca.uhn.fhir.jpa.term.BaseHapiTerminologySvcImpl.toPersistedConcepts(BaseHapiTerminologySvcImpl.java:1325)
at ca.uhn.fhir.jpa.term.BaseHapiTerminologySvcImpl.storeNewCodeSystemVersionIfNeeded(BaseHapiTerminologySvcImpl.java:1310)
at sun.reflect.GeneratedMethodAccessor132.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:343)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:205)
at com.sun.proxy.$Proxy153.storeNewCodeSystemVersionIfNeeded(Unknown Source)
at ca.uhn.fhir.jpa.dao.r4.FhirResourceDaoCodeSystemR4.updateEntity(FhirResourceDaoCodeSystemR4.java:138)
at ca.uhn.fhir.jpa.dao.BaseHapiFhirResourceDao.doCreate(BaseHapiFhirResourceDao.java:436)
at ca.uhn.fhir.jpa.dao.BaseHapiFhirResourceDao.update(BaseHapiFhirResourceDao.java:1341)
at ca.uhn.fhir.jpa.dao.BaseHapiFhirResourceDao.update(BaseHapiFhirResourceDao.java:1407)
at ca.uhn.fhir.jpa.dao.BaseHapiFhirResourceDao.update(BaseHapiFhirResourceDao.java:1402)
at ca.uhn.fhir.jpa.dao.BaseHapiFhirResourceDao.update(BaseHapiFhirResourceDao.java:1296)
at sun.reflect.GeneratedMethodAccessor131.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:343)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:198)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:163)
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:139)
... 37 common frames omitted
2019-08-29 17:01:12.735 [http-bio-8080-exec-3] INFO fhirtest.access [LoggingInterceptor.java:156] ERROR - PUT http://localhost:8080/hapi-fhir-jpaserver/fhir/CodeSystem/v2-0301
Successful upload expected.
Hi, 3.8.0 of hapi-fhir is out now. We are basing our FHIR server off your version. Do you have any plans to upgrade? Thanks.
Hello,
When testing, we often need to validate against all FHIR versions. Right now the way we do it is to spin up multiple FHIR servers each having a different version. Only one FHIR version per server is currently supported here.
I'm not sure whether it makes sense to support multiple versions of FHIR beyond testing purposes ? If not then I don't think it's worth the effort.
Thanks !
In order to improve resource throughput (in an ETL-like scenario), is it feasible to run multiple instances of this server using a single (Postgres) database backend?
I've done some benchmarks using 5 instances of this server and the same database backend (official Postgres 11.5 Docker image) using datasource.driver=org.postgresql.Driver
. The servers are running on Docker Swarm Mode and are load-balanced using Traefik (with simple round robin). I achieved throughputs of creating around 1000 resources per second (sending transactions containing 500 Observation resources in parallel to all servers).
This actually worked well for many benchmark runs but after some time I received the following exception:
org.postgresql.util.PSQLException: ERROR: duplicate key value violates
unique constraint "hfj_spidx_quantity_pkey" Detail: Key (sp_id)=(2) already exists.
I assume this is the result of a race condition when creating IDs for the resources between the multiple servers. Which is hard to reproduce and only occurred after already transferring around half a million resources.
Do you have any insights into what parts of the server may need to be tweaked to ensure Resource-integrity when multiple server instances are accessing the same database? - if this is feasible at all.
So forgive me I am not well versed in working with databases. I cloned the starter project and was able to run that without any issues. Running it using mvn jetty:run ... I want to see if I can connect it to a mysql database instead of the default derby. I followed your instructions
Created the database on the local machine
CREATE USER 'hapiDbUser'@'localhost' IDENTIFIED BY 'hapiDbPass';
CREATE DATABASE hapi_dstu3;
GRANT ALL PRIVILEGES ON hapi_dstu3.* to 'hapiDbUser'@'localhost';
FLUSH PRIVILEGES;
then updated the hapi properties file
datasource.driver=com.mysql.cj.jdbc.Driver
datasource.url=jdbc:mysql://localhost:3306/hapi_dstu3
datasource.username=hapiDbUser
datasource.password=hapiDbPass
hibernate.dialect=org.hibernate.dialect.MySQL5Dialect
2020-01-24 16:04:37.592 [main] ERROR o.h.e.j.e.i.JdbcEnvironmentImpl [JdbcEnvironmentImpl.java:420] Could not fetch the SequenceInformation from the database
java.sql.SQLSyntaxErrorException: Unknown table 'SEQUENCES' in information_schema
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:118)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:95)
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122)
at com.mysql.cj.jdbc.StatementImpl.executeQuery(StatementImpl.java:1247)
at org.apache.commons.dbcp2.DelegatingStatement.executeQuery(DelegatingStatement.java:329)
at org.apache.commons.dbcp2.DelegatingStatement.executeQuery(DelegatingStatement.java:329)
at org.hibernate.tool.schema.extract.internal.SequenceInformationExtractorLegacyImpl.extractMetadata(SequenceInformationExtractorLegacyImpl.java:42)
at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentImpl.sequenceInformationList(JdbcEnvironmentImpl.java:403)
at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentImpl.(JdbcEnvironmentImpl.java:268)
at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.initiateService(JdbcEnvironmentInitiator.java:114)
at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.initiateService(JdbcEnvironmentInitiator.java:35)
at org.hibernate.boot.registry.internal.StandardServiceRegistryImpl.initiateService(StandardServiceRegistryImpl.java:101)
at org.hibernate.service.internal.AbstractServiceRegistryImpl.createService(AbstractServiceRegistryImpl.java:263)
at org.hibernate.service.internal.AbstractServiceRegistryImpl.initializeService(AbstractServiceRegistryImpl.java:237)
at org.hibernate.service.internal.AbstractServiceRegistryImpl.getService(AbstractServiceRegistryImpl.java:214)
at org.hibernate.id.factory.internal.DefaultIdentifierGeneratorFactory.injectServices(DefaultIdentifierGeneratorFactory.java:152)
at org.hibernate.service.internal.AbstractServiceRegistryImpl.injectDependencies(AbstractServiceRegistryImpl.java:286)
at org.hibernate.service.internal.AbstractServiceRegistryImpl.initializeService(AbstractServiceRegistryImpl.java:243)
at org.hibernate.service.internal.AbstractServiceRegistryImpl.getService(AbstractServiceRegistryImpl.java:214)
at org.hibernate.boot.internal.InFlightMetadataCollectorImpl.(InFlightMetadataCollectorImpl.java:175)
at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.complete(MetadataBuildingProcess.java:118)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.metadata(EntityManagerFactoryBuilderImpl.java:900)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:931)
at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory(HibernatePersistenceProvider.java:141)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:365)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:391)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:378)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet(LocalContainerEntityManagerFactoryBean.java:341)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1862)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1799)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:595)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:517)
at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:323)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:321)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1108)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:868)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:550)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:401)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:292)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:103)
at org.eclipse.jetty.server.handler.ContextHandler.callContextInitialized(ContextHandler.java:890)
at org.eclipse.jetty.servlet.ServletContextHandler.callContextInitialized(ServletContextHandler.java:532)
at org.eclipse.jetty.server.handler.ContextHandler.startContext(ContextHandler.java:853)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:344)
at org.eclipse.jetty.webapp.WebAppContext.startWebapp(WebAppContext.java:1515)
at org.eclipse.jetty.maven.plugin.JettyWebAppContext.startWebapp(JettyWebAppContext.java:360)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1477)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:785)
at org.eclipse.jetty.servlet.ServletContextHandler.doStart(ServletContextHandler.java:261)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:545)
at org.eclipse.jetty.maven.plugin.JettyWebAppContext.doStart(JettyWebAppContext.java:428)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start(ContainerLifeCycle.java:133)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart(ContainerLifeCycle.java:115)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:113)
at org.eclipse.jetty.server.handler.ContextHandlerCollection.doStart(ContextHandlerCollection.java:167)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start(ContainerLifeCycle.java:133)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart(ContainerLifeCycle.java:115)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:113)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start(ContainerLifeCycle.java:133)
at org.eclipse.jetty.server.Server.start(Server.java:418)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart(ContainerLifeCycle.java:107)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:113)
at org.eclipse.jetty.server.Server.doStart(Server.java:385)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
at org.eclipse.jetty.maven.plugin.AbstractJettyMojo.startJetty(AbstractJettyMojo.java:461)
at org.eclipse.jetty.maven.plugin.AbstractJettyMojo.execute(AbstractJettyMojo.java:327)
at org.eclipse.jetty.maven.plugin.JettyRunMojo.execute(JettyRunMojo.java:183)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:137)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:208)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:154)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:146)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:117)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:81)
at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:56)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:305)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:192)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:105)
at org.apache.maven.cli.MavenCli.execute(MavenCli.java:954)
at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:288)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:192)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415)
at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356)
2020-01-24 16:04:38.133 [main] INFO org.hibernate.orm.beans [ManagedBeanRegistryInitiator.java:73] HHH10005002: No explicit CDI BeanManager reference was passed to Hibernate, but CDI is available on the Hibernate ClassLoader.
2020-01-24 16:04:38.235 [main] INFO o.h.validator.internal.util.Version [Version.java:30] HV000001: Hibernate Validator 5.4.2.Final
2020-01-24 16:04:38.634 [main] INFO org.hibernate.search.engine.Version [Version.java:27] HSEARCH000034: Hibernate Search 5.11.3.Final
2020-01-24 16:04:40.069 [main] WARN o.h.e.jdbc.spi.SqlExceptionHelper [SqlExceptionHelper.java:137] SQL Error: 1109, SQLState: 42S02
2020-01-24 16:04:40.069 [main] ERROR o.h.e.jdbc.spi.SqlExceptionHelper [SqlExceptionHelper.java:142] Unknown table 'SEQUENCES' in information_schema
2020-01-24 16:04:40.074 [main] WARN c.u.f.jpa.starter.ApplicationContext [AbstractApplicationContext.java:558] Exception encountered during context initialization - cancelling refresh attempt: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in ca.uhn.fhir.jpa.starter.FhirServerConfigR4: Invocation of init method failed; nested exception is javax.persistence.PersistenceException: [PersistenceUnit: HAPI_PU] Unable to build Hibernate SessionFactory; nested exception is org.hibernate.exception.SQLGrammarException: Unable to build DatabaseInformation
2020-01-24 16:04:40.078 [main] ERROR o.s.web.context.ContextLoader [ContextLoader.java:313] Context initialization failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in ca.uhn.fhir.jpa.starter.FhirServerConfigR4: Invocation of init method failed; nested exception is javax.persistence.PersistenceException: [PersistenceUnit: HAPI_PU] Unable to build Hibernate SessionFactory; nested exception is org.hibernate.exception.SQLGrammarException: Unable to build DatabaseInformation
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1803)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:595)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:517)
at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:323)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:321)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1108)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:868)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:550)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:401)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:292)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:103)
at org.eclipse.jetty.server.handler.ContextHandler.callContextInitialized(ContextHandler.java:890)
at org.eclipse.jetty.servlet.ServletContextHandler.callContextInitialized(ServletContextHandler.java:532)
at org.eclipse.jetty.server.handler.ContextHandler.startContext(ContextHandler.java:853)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:344)
at org.eclipse.jetty.webapp.WebAppContext.startWebapp(WebAppContext.java:1515)
at org.eclipse.jetty.maven.plugin.JettyWebAppContext.startWebapp(JettyWebAppContext.java:360)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1477)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:785)
at org.eclipse.jetty.servlet.ServletContextHandler.doStart(ServletContextHandler.java:261)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:545)
at org.eclipse.jetty.maven.plugin.JettyWebAppContext.doStart(JettyWebAppContext.java:428)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start(ContainerLifeCycle.java:133)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart(ContainerLifeCycle.java:115)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:113)
at org.eclipse.jetty.server.handler.ContextHandlerCollection.doStart(ContextHandlerCollection.java:167)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start(ContainerLifeCycle.java:133)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart(ContainerLifeCycle.java:115)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:113)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start(ContainerLifeCycle.java:133)
at org.eclipse.jetty.server.Server.start(Server.java:418)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart(ContainerLifeCycle.java:107)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:113)
at org.eclipse.jetty.server.Server.doStart(Server.java:385)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
at org.eclipse.jetty.maven.plugin.AbstractJettyMojo.startJetty(AbstractJettyMojo.java:461)
at org.eclipse.jetty.maven.plugin.AbstractJettyMojo.execute(AbstractJettyMojo.java:327)
at org.eclipse.jetty.maven.plugin.JettyRunMojo.execute(JettyRunMojo.java:183)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:137)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:208)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:154)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:146)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:117)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:81)
at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:56)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:305)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:192)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:105)
at org.apache.maven.cli.MavenCli.execute(MavenCli.java:954)
at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:288)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:192)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415)
at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356)
Caused by: javax.persistence.PersistenceException: [PersistenceUnit: HAPI_PU] Unable to build Hibernate SessionFactory; nested exception is org.hibernate.exception.SQLGrammarException: Unable to build DatabaseInformation
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:403)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:378)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet(LocalContainerEntityManagerFactoryBean.java:341)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1862)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1799)
... 64 common frames omitted
Caused by: org.hibernate.exception.SQLGrammarException: Unable to build DatabaseInformation
at org.hibernate.exception.internal.SQLExceptionTypeDelegate.convert(SQLExceptionTypeDelegate.java:63)
at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:42)
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:113)
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:99)
at org.hibernate.tool.schema.internal.Helper.buildDatabaseInformation(Helper.java:163)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.doMigration(AbstractSchemaMigrator.java:96)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.performDatabaseAction(SchemaManagementToolCoordinator.java:184)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.process(SchemaManagementToolCoordinator.java:73)
at org.hibernate.internal.SessionFactoryImpl.(SessionFactoryImpl.java:320)
at org.hibernate.boot.internal.SessionFactoryBuilderImpl.build(SessionFactoryBuilderImpl.java:462)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:935)
at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory(HibernatePersistenceProvider.java:141)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:365)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:391)
... 68 common frames omitted
Caused by: java.sql.SQLSyntaxErrorException: Unknown table 'SEQUENCES' in information_schema
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:118)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:95)
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122)
at com.mysql.cj.jdbc.StatementImpl.executeQuery(StatementImpl.java:1247)
at org.apache.commons.dbcp2.DelegatingStatement.executeQuery(DelegatingStatement.java:329)
at org.apache.commons.dbcp2.DelegatingStatement.executeQuery(DelegatingStatement.java:329)
at org.hibernate.tool.schema.extract.internal.SequenceInformationExtractorLegacyImpl.extractMetadata(SequenceInformationExtractorLegacyImpl.java:42)
at org.hibernate.tool.schema.extract.internal.DatabaseInformationImpl.initializeSequences(DatabaseInformationImpl.java:65)
at org.hibernate.tool.schema.extract.internal.DatabaseInformationImpl.(DatabaseInformationImpl.java:59)
at org.hibernate.tool.schema.internal.Helper.buildDatabaseInformation(Helper.java:155)
... 77 common frames omitted
[WARNING] Failed startup of context o.e.j.m.p.JettyWebAppContext@53c6f96d{/hapi-fhir-jpaserver,[file:///opt/hapi-fhir-jpaserver-starter/src/main/webapp/, file:///opt/hapi-fhir-jpaserver-starter/target/jetty_overlays/hapi-fhir-testpage-overlay-4_1_0_war/, jar:file:///root/.m2/repository/org/webjars/Eonasdan-bootstrap-datetimepicker/4.17.43/Eonasdan-bootstrap-datetimepicker-4.17.43.jar!/META-INF/resources, jar:file:///root/.m2/repository/org/webjars/bower/awesome-bootstrap-checkbox/1.0.1/awesome-bootstrap-checkbox-1.0.1.jar!/META-INF/resources, jar:file:///root/.m2/repository/org/webjars/font-awesome/5.8.2/font-awesome-5.8.2.jar!/META-INF/resources, jar:file:///root/.m2/repository/org/webjars/jstimezonedetect/1.0.6/jstimezonedetect-1.0.6.jar!/META-INF/resources, jar:file:///root/.m2/repository/org/webjars/bower/jquery/3.3.1/jquery-3.3.1.jar!/META-INF/resources, jar:file:///root/.m2/repository/org/webjars/jquery/1.11.1/jquery-1.11.1.jar!/META-INF/resources, jar:file:///root/.m2/repository/org/webjars/bower/moment/2.15.1/moment-2.15.1.jar!/META-INF/resources, jar:file:///root/.m2/repository/org/webjars/bootstrap/3.3.7/bootstrap-3.3.7.jar!/META-INF/resources, jar:file:///root/.m2/repository/org/webjars/momentjs/2.10.3/momentjs-2.10.3.jar!/META-INF/resources, jar:file:///root/.m2/repository/org/webjars/select2/4.0.3/select2-4.0.3.jar!/META-INF/resources],UNAVAILABLE}{file:///opt/hapi-fhir-jpaserver-starter/src/main/webapp/}
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'entityManagerFactory' defined in ca.uhn.fhir.jpa.starter.FhirServerConfigR4: Invocation of init method failed; nested exception is javax.persistence.PersistenceException: [PersistenceUnit: HAPI_PU] Unable to build Hibernate SessionFactory; nested exception is org.hibernate.exception.SQLGrammarException: Unable to build DatabaseInformation
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean (AbstractAutowireCapableBeanFactory.java:1803)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean (AbstractAutowireCapableBeanFactory.java:595)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean (AbstractAutowireCapableBeanFactory.java:517)
at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0 (AbstractBeanFactory.java:323)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton (DefaultSingletonBeanRegistry.java:222)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean (AbstractBeanFactory.java:321)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean (AbstractBeanFactory.java:202)
at org.springframework.context.support.AbstractApplicationContext.getBean (AbstractApplicationContext.java:1108)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization (AbstractApplicationContext.java:868)
at org.springframework.context.support.AbstractApplicationContext.refresh (AbstractApplicationContext.java:550)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext (ContextLoader.java:401)
at org.springframework.web.context.ContextLoader.initWebApplicationContext (ContextLoader.java:292)
at org.springframework.web.context.ContextLoaderListener.contextInitialized (ContextLoaderListener.java:103)
at org.eclipse.jetty.server.handler.ContextHandler.callContextInitialized (ContextHandler.java:890)
at org.eclipse.jetty.servlet.ServletContextHandler.callContextInitialized (ServletContextHandler.java:532)
at org.eclipse.jetty.server.handler.ContextHandler.startContext (ContextHandler.java:853)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext (ServletContextHandler.java:344)
at org.eclipse.jetty.webapp.WebAppContext.startWebapp (WebAppContext.java:1515)
at org.eclipse.jetty.maven.plugin.JettyWebAppContext.startWebapp (JettyWebAppContext.java:360)
at org.eclipse.jetty.webapp.WebAppContext.startContext (WebAppContext.java:1477)
at org.eclipse.jetty.server.handler.ContextHandler.doStart (ContextHandler.java:785)
at org.eclipse.jetty.servlet.ServletContextHandler.doStart (ServletContextHandler.java:261)
at org.eclipse.jetty.webapp.WebAppContext.doStart (WebAppContext.java:545)
at org.eclipse.jetty.maven.plugin.JettyWebAppContext.doStart (JettyWebAppContext.java:428)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start (AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start (ContainerLifeCycle.java:133)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart (ContainerLifeCycle.java:115)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart (AbstractHandler.java:113)
at org.eclipse.jetty.server.handler.ContextHandlerCollection.doStart (ContextHandlerCollection.java:167)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start (AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start (ContainerLifeCycle.java:133)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart (ContainerLifeCycle.java:115)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart (AbstractHandler.java:113)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start (AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start (ContainerLifeCycle.java:133)
at org.eclipse.jetty.server.Server.start (Server.java:418)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart (ContainerLifeCycle.java:107)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart (AbstractHandler.java:113)
at org.eclipse.jetty.server.Server.doStart (Server.java:385)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start (AbstractLifeCycle.java:68)
at org.eclipse.jetty.maven.plugin.AbstractJettyMojo.startJetty (AbstractJettyMojo.java:461)
at org.eclipse.jetty.maven.plugin.AbstractJettyMojo.execute (AbstractJettyMojo.java:327)
at org.eclipse.jetty.maven.plugin.JettyRunMojo.execute (JettyRunMojo.java:183)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:137)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:208)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81)
at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:56)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192)
at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105)
at org.apache.maven.cli.MavenCli.execute (MavenCli.java:954)
at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:288)
at org.apache.maven.cli.MavenCli.main (MavenCli.java:192)
at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke (Method.java:498)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415)
at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356)
Caused by: javax.persistence.PersistenceException: [PersistenceUnit: HAPI_PU] Unable to build Hibernate SessionFactory; nested exception is org.hibernate.exception.SQLGrammarException: Unable to build DatabaseInformation
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory (AbstractEntityManagerFactoryBean.java:403)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet (AbstractEntityManagerFactoryBean.java:378)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet (LocalContainerEntityManagerFactoryBean.java:341)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods (AbstractAutowireCapableBeanFactory.java:1862)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean (AbstractAutowireCapableBeanFactory.java:1799)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean (AbstractAutowireCapableBeanFactory.java:595)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean (AbstractAutowireCapableBeanFactory.java:517)
at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0 (AbstractBeanFactory.java:323)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton (DefaultSingletonBeanRegistry.java:222)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean (AbstractBeanFactory.java:321)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean (AbstractBeanFactory.java:202)
at org.springframework.context.support.AbstractApplicationContext.getBean (AbstractApplicationContext.java:1108)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization (AbstractApplicationContext.java:868)
at org.springframework.context.support.AbstractApplicationContext.refresh (AbstractApplicationContext.java:550)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext (ContextLoader.java:401)
at org.springframework.web.context.ContextLoader.initWebApplicationContext (ContextLoader.java:292)
at org.springframework.web.context.ContextLoaderListener.contextInitialized (ContextLoaderListener.java:103)
at org.eclipse.jetty.server.handler.ContextHandler.callContextInitialized (ContextHandler.java:890)
at org.eclipse.jetty.servlet.ServletContextHandler.callContextInitialized (ServletContextHandler.java:532)
at org.eclipse.jetty.server.handler.ContextHandler.startContext (ContextHandler.java:853)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext (ServletContextHandler.java:344)
at org.eclipse.jetty.webapp.WebAppContext.startWebapp (WebAppContext.java:1515)
at org.eclipse.jetty.maven.plugin.JettyWebAppContext.startWebapp (JettyWebAppContext.java:360)
at org.eclipse.jetty.webapp.WebAppContext.startContext (WebAppContext.java:1477)
at org.eclipse.jetty.server.handler.ContextHandler.doStart (ContextHandler.java:785)
at org.eclipse.jetty.servlet.ServletContextHandler.doStart (ServletContextHandler.java:261)
at org.eclipse.jetty.webapp.WebAppContext.doStart (WebAppContext.java:545)
at org.eclipse.jetty.maven.plugin.JettyWebAppContext.doStart (JettyWebAppContext.java:428)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start (AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start (ContainerLifeCycle.java:133)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart (ContainerLifeCycle.java:115)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart (AbstractHandler.java:113)
at org.eclipse.jetty.server.handler.ContextHandlerCollection.doStart (ContextHandlerCollection.java:167)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start (AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start (ContainerLifeCycle.java:133)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart (ContainerLifeCycle.java:115)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart (AbstractHandler.java:113)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start (AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start (ContainerLifeCycle.java:133)
at org.eclipse.jetty.server.Server.start (Server.java:418)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart (ContainerLifeCycle.java:107)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart (AbstractHandler.java:113)
at org.eclipse.jetty.server.Server.doStart (Server.java:385)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start (AbstractLifeCycle.java:68)
at org.eclipse.jetty.maven.plugin.AbstractJettyMojo.startJetty (AbstractJettyMojo.java:461)
at org.eclipse.jetty.maven.plugin.AbstractJettyMojo.execute (AbstractJettyMojo.java:327)
at org.eclipse.jetty.maven.plugin.JettyRunMojo.execute (JettyRunMojo.java:183)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:137)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:208)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81)
at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:56)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192)
at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105)
at org.apache.maven.cli.MavenCli.execute (MavenCli.java:954)
at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:288)
at org.apache.maven.cli.MavenCli.main (MavenCli.java:192)
at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke (Method.java:498)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415)
at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356)
Caused by: org.hibernate.exception.SQLGrammarException: Unable to build DatabaseInformation
at org.hibernate.exception.internal.SQLExceptionTypeDelegate.convert (SQLExceptionTypeDelegate.java:63)
at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert (StandardSQLExceptionConverter.java:42)
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert (SqlExceptionHelper.java:113)
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert (SqlExceptionHelper.java:99)
at org.hibernate.tool.schema.internal.Helper.buildDatabaseInformation (Helper.java:163)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.doMigration (AbstractSchemaMigrator.java:96)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.performDatabaseAction (SchemaManagementToolCoordinator.java:184)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.process (SchemaManagementToolCoordinator.java:73)
at org.hibernate.internal.SessionFactoryImpl. (SessionFactoryImpl.java:320)
at org.hibernate.boot.internal.SessionFactoryBuilderImpl.build (SessionFactoryBuilderImpl.java:462)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build (EntityManagerFactoryBuilderImpl.java:935)
at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory (HibernatePersistenceProvider.java:141)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory (LocalContainerEntityManagerFactoryBean.java:365)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory (AbstractEntityManagerFactoryBean.java:391)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet (AbstractEntityManagerFactoryBean.java:378)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet (LocalContainerEntityManagerFactoryBean.java:341)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods (AbstractAutowireCapableBeanFactory.java:1862)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean (AbstractAutowireCapableBeanFactory.java:1799)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean (AbstractAutowireCapableBeanFactory.java:595)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean (AbstractAutowireCapableBeanFactory.java:517)
at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0 (AbstractBeanFactory.java:323)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton (DefaultSingletonBeanRegistry.java:222)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean (AbstractBeanFactory.java:321)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean (AbstractBeanFactory.java:202)
at org.springframework.context.support.AbstractApplicationContext.getBean (AbstractApplicationContext.java:1108)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization (AbstractApplicationContext.java:868)
at org.springframework.context.support.AbstractApplicationContext.refresh (AbstractApplicationContext.java:550)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext (ContextLoader.java:401)
at org.springframework.web.context.ContextLoader.initWebApplicationContext (ContextLoader.java:292)
at org.springframework.web.context.ContextLoaderListener.contextInitialized (ContextLoaderListener.java:103)
at org.eclipse.jetty.server.handler.ContextHandler.callContextInitialized (ContextHandler.java:890)
at org.eclipse.jetty.servlet.ServletContextHandler.callContextInitialized (ServletContextHandler.java:532)
at org.eclipse.jetty.server.handler.ContextHandler.startContext (ContextHandler.java:853)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext (ServletContextHandler.java:344)
at org.eclipse.jetty.webapp.WebAppContext.startWebapp (WebAppContext.java:1515)
at org.eclipse.jetty.maven.plugin.JettyWebAppContext.startWebapp (JettyWebAppContext.java:360)
at org.eclipse.jetty.webapp.WebAppContext.startContext (WebAppContext.java:1477)
at org.eclipse.jetty.server.handler.ContextHandler.doStart (ContextHandler.java:785)
at org.eclipse.jetty.servlet.ServletContextHandler.doStart (ServletContextHandler.java:261)
at org.eclipse.jetty.webapp.WebAppContext.doStart (WebAppContext.java:545)
at org.eclipse.jetty.maven.plugin.JettyWebAppContext.doStart (JettyWebAppContext.java:428)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start (AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start (ContainerLifeCycle.java:133)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart (ContainerLifeCycle.java:115)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart (AbstractHandler.java:113)
at org.eclipse.jetty.server.handler.ContextHandlerCollection.doStart (ContextHandlerCollection.java:167)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start (AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start (ContainerLifeCycle.java:133)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart (ContainerLifeCycle.java:115)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart (AbstractHandler.java:113)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start (AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start (ContainerLifeCycle.java:133)
at org.eclipse.jetty.server.Server.start (Server.java:418)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart (ContainerLifeCycle.java:107)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart (AbstractHandler.java:113)
at org.eclipse.jetty.server.Server.doStart (Server.java:385)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start (AbstractLifeCycle.java:68)
at org.eclipse.jetty.maven.plugin.AbstractJettyMojo.startJetty (AbstractJettyMojo.java:461)
at org.eclipse.jetty.maven.plugin.AbstractJettyMojo.execute (AbstractJettyMojo.java:327)
at org.eclipse.jetty.maven.plugin.JettyRunMojo.execute (JettyRunMojo.java:183)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:137)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:208)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81)
at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:56)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192)
at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105)
at org.apache.maven.cli.MavenCli.execute (MavenCli.java:954)
at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:288)
at org.apache.maven.cli.MavenCli.main (MavenCli.java:192)
at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke (Method.java:498)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415)
at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356)
Caused by: java.sql.SQLSyntaxErrorException: Unknown table 'SEQUENCES' in information_schema
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException (SQLError.java:118)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException (SQLError.java:95)
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException (SQLExceptionsMapping.java:122)
at com.mysql.cj.jdbc.StatementImpl.executeQuery (StatementImpl.java:1247)
at org.apache.commons.dbcp2.DelegatingStatement.executeQuery (DelegatingStatement.java:329)
at org.apache.commons.dbcp2.DelegatingStatement.executeQuery (DelegatingStatement.java:329)
at org.hibernate.tool.schema.extract.internal.SequenceInformationExtractorLegacyImpl.extractMetadata (SequenceInformationExtractorLegacyImpl.java:42)
at org.hibernate.tool.schema.extract.internal.DatabaseInformationImpl.initializeSequences (DatabaseInformationImpl.java:65)
at org.hibernate.tool.schema.extract.internal.DatabaseInformationImpl. (DatabaseInformationImpl.java:59)
at org.hibernate.tool.schema.internal.Helper.buildDatabaseInformation (Helper.java:155)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.doMigration (AbstractSchemaMigrator.java:96)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.performDatabaseAction (SchemaManagementToolCoordinator.java:184)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.process (SchemaManagementToolCoordinator.java:73)
at org.hibernate.internal.SessionFactoryImpl. (SessionFactoryImpl.java:320)
at org.hibernate.boot.internal.SessionFactoryBuilderImpl.build (SessionFactoryBuilderImpl.java:462)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build (EntityManagerFactoryBuilderImpl.java:935)
at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory (HibernatePersistenceProvider.java:141)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory (LocalContainerEntityManagerFactoryBean.java:365)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory (AbstractEntityManagerFactoryBean.java:391)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet (AbstractEntityManagerFactoryBean.java:378)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet (LocalContainerEntityManagerFactoryBean.java:341)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods (AbstractAutowireCapableBeanFactory.java:1862)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean (AbstractAutowireCapableBeanFactory.java:1799)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean (AbstractAutowireCapableBeanFactory.java:595)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean (AbstractAutowireCapableBeanFactory.java:517)
at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0 (AbstractBeanFactory.java:323)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton (DefaultSingletonBeanRegistry.java:222)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean (AbstractBeanFactory.java:321)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean (AbstractBeanFactory.java:202)
at org.springframework.context.support.AbstractApplicationContext.getBean (AbstractApplicationContext.java:1108)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization (AbstractApplicationContext.java:868)
at org.springframework.context.support.AbstractApplicationContext.refresh (AbstractApplicationContext.java:550)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext (ContextLoader.java:401)
at org.springframework.web.context.ContextLoader.initWebApplicationContext (ContextLoader.java:292)
at org.springframework.web.context.ContextLoaderListener.contextInitialized (ContextLoaderListener.java:103)
at org.eclipse.jetty.server.handler.ContextHandler.callContextInitialized (ContextHandler.java:890)
at org.eclipse.jetty.servlet.ServletContextHandler.callContextInitialized (ServletContextHandler.java:532)
at org.eclipse.jetty.server.handler.ContextHandler.startContext (ContextHandler.java:853)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext (ServletContextHandler.java:344)
at org.eclipse.jetty.webapp.WebAppContext.startWebapp (WebAppContext.java:1515)
at org.eclipse.jetty.maven.plugin.JettyWebAppContext.startWebapp (JettyWebAppContext.java:360)
at org.eclipse.jetty.webapp.WebAppContext.startContext (WebAppContext.java:1477)
at org.eclipse.jetty.server.handler.ContextHandler.doStart (ContextHandler.java:785)
at org.eclipse.jetty.servlet.ServletContextHandler.doStart (ServletContextHandler.java:261)
at org.eclipse.jetty.webapp.WebAppContext.doStart (WebAppContext.java:545)
at org.eclipse.jetty.maven.plugin.JettyWebAppContext.doStart (JettyWebAppContext.java:428)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start (AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start (ContainerLifeCycle.java:133)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart (ContainerLifeCycle.java:115)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart (AbstractHandler.java:113)
at org.eclipse.jetty.server.handler.ContextHandlerCollection.doStart (ContextHandlerCollection.java:167)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start (AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start (ContainerLifeCycle.java:133)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart (ContainerLifeCycle.java:115)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart (AbstractHandler.java:113)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start (AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start (ContainerLifeCycle.java:133)
at org.eclipse.jetty.server.Server.start (Server.java:418)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart (ContainerLifeCycle.java:107)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart (AbstractHandler.java:113)
at org.eclipse.jetty.server.Server.doStart (Server.java:385)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start (AbstractLifeCycle.java:68)
at org.eclipse.jetty.maven.plugin.AbstractJettyMojo.startJetty (AbstractJettyMojo.java:461)
at org.eclipse.jetty.maven.plugin.AbstractJettyMojo.execute (AbstractJettyMojo.java:327)
at org.eclipse.jetty.maven.plugin.JettyRunMojo.execute (JettyRunMojo.java:183)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:137)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:208)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81)
at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:56)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192)
at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105)
at org.apache.maven.cli.MavenCli.execute (MavenCli.java:954)
at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:288)
at org.apache.maven.cli.MavenCli.main (MavenCli.java:192)
at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke (Method.java:498)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415)
at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:
I am trying to import the structure definitions and value sets from the US Core R4 profile on a fresh implementation of this HAPI starter server.
The only change I've made is enabling validation on incoming requests here: https://github.com/hapifhir/hapi-fhir-jpaserver-starter/blob/master/src/main/resources/hapi.properties#L50
I'm new to FHIR and unsure if this is an issue with how HAPI does validation or if there is something wrong with the actual structure definitions for US Core.
Hi,
I am testing some functionalities of fhir and get this error. It seems like IPreResourceShowDetails can not be found, even when hapi-fhir-base
is included in my POM:
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>3.8.0</version>
<relativePath/>
</parent>
<groupId>ca.uhn.hapi.fhir.demo</groupId>
<artifactId>hapi-fhir-jpaserver-starter</artifactId>
<dependencies>
**<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>${project.version}</version>
</dependency>**
...etc
</project>
Server | HAPI FHIR R4 Server
Software | HAPI FHIR Server - 4.1.0
I am connecting the the Starter server with the lhnbc questionnaire app https://github.com/lhncbc/lforms-fhir-app and running into a warning message when I am saving a questionnaire form. There are not errors other then the warning and it is saving the forms in the Questionnaire section of the FHIR server. It will just not pull in the saved questionnaireresponse.
2019-12-02 19:34:58.402 [qtp1723177853-19] INFO fhirtest.access [LoggingInterceptor.java:175] Path[/fhir] Source[] Operation[search-type Questionnaire] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/78.0.3904.108 Safari/537.36] Params[?_count=10&_sort=-_lastUpdated] ResponseEncoding[JSON]
2019-12-02 19:34:58.424 [qtp1723177853-40] INFO ca.uhn.fhir.jpa.dao.SearchBuilder [SearchBuilder.java:2570] Loaded 0 _includes in 1 rounds and 2 ms for search 2fedd753-8de1-4832-bc09-cc18ea64425e
2019-12-02 19:34:58.500 [qtp1723177853-40] INFO fhirtest.access [LoggingInterceptor.java:175] Path[/fhir] Source[] Operation[search-type QuestionnaireResponse] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/78.0.3904.108 Safari/537.36] Params[?_include=QuestionnaireResponse%3Aquestionnaire&_count=5&patient=siimandy&subject=Patient%2Fsiimandy&_sort=-_lastUpdated] ResponseEncoding[JSON]
2019-12-02 19:35:01.546 [qtp1723177853-40] WARN c.u.fhir.parser.LenientErrorHandler [LenientErrorHandler.java:150] Unknown element 'use' found while parsing
2019-12-02 19:35:01.547 [qtp1723177853-40] WARN c.u.fhir.parser.LenientErrorHandler [LenientErrorHandler.java:150] Unknown element 'family' found while parsing
2019-12-02 19:35:01.547 [qtp1723177853-40] WARN c.u.fhir.parser.LenientErrorHandler [LenientErrorHandler.java:150] Unknown element 'given' found while parsing
2019-12-02 19:35:01.547 [qtp1723177853-40] WARN c.u.fhir.parser.LenientErrorHandler [LenientErrorHandler.java:136] Multiple repetitions of non-repeatable element 'display' found while parsing
2019-12-02 19:35:01.677 [qtp1723177853-40] INFO fhirtest.access [LoggingInterceptor.java:175] Path[/fhir] Source[] Operation[update QuestionnaireResponse/103] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/78.0.3904.108 Safari/537.36] Params[] ResponseEncoding[JSON]
2019-12-02 19:35:01.710 [qtp1723177853-19] INFO ca.uhn.fhir.jpa.dao.SearchBuilder [SearchBuilder.java:2570] Loaded 0 _includes in 1 rounds and 1 ms for search c8084af6-820d-43fc-ad33-05dd38be5cbb
2019-12-02 19:35:01.717 [qtp1723177853-19] INFO fhirtest.access [LoggingInterceptor.java:175] Path[/fhir] Source[] Operation[search-type QuestionnaireResponse] UA[Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/78.0.3904.108 Safari/537.36] Params[?_include=QuestionnaireResponse%3Aquestionnaire&_count=5&patient=siimandy&subject=Patient%2Fsiimandy&_sort=-_lastUpdated] ResponseEncoding[JSON]
HAPI FHIR 3.8 has been officially released, but this project still shows as based on HAPI FHIR 3.7 (according to the pom.xml). Should it be tagged with 3.8? Is it safe to run against 3.8?
Last change failed. Changing version from 4.0.0 to 4.0.3. Should the repository be changed to maven? https://oss.sonatype.org/content/repositories/snapshots/
Describe the Feature Request
Support MariaDB compliant with Apache 2.0. MySQL connector has a different commercial use and it cannot be used freely.
Is your feature request related to a problem? Please describe
Cover DB connectors compliant with Apache 2.0 would spread the use of the component.
Describe Preferred Solution
Add the MariaDB connector to the maven pom. Modify the configuration of the server and provide a docker-compose for testing.
Additional Context
2019-11-16 23:33:48.299 [RMI TCP Connection(2)-127.0.0.1] WARN o.h.t.s.i.ExceptionHandlerLoggedImpl [ExceptionHandlerLoggedImpl.java:27] GenerationTarget encountered exception accepting command : Error executing DDL "create index IDX_SP_URI on HFJ_SPIDX_URI (RES_TYPE, SP_NAME, SP_URI)" via JDBC Statement
org.hibernate.tool.schema.spi.CommandAcceptanceException: Error executing DDL "create index IDX_SP_URI on HFJ_SPIDX_URI (RES_TYPE, SP_NAME, SP_URI)" via JDBC Statement
at org.hibernate.tool.schema.internal.exec.GenerationTargetToDatabase.accept(GenerationTargetToDatabase.java:67)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlString(AbstractSchemaMigrator.java:559)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlStrings(AbstractSchemaMigrator.java:504)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applyIndexes(AbstractSchemaMigrator.java:331)
at org.hibernate.tool.schema.internal.GroupedSchemaMigratorImpl.performTablesMigration(GroupedSchemaMigratorImpl.java:84)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.performMigration(AbstractSchemaMigrator.java:207)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.doMigration(AbstractSchemaMigrator.java:114)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.performDatabaseAction(SchemaManagementToolCoordinator.java:184)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.process(SchemaManagementToolCoordinator.java:73)
at org.hibernate.internal.SessionFactoryImpl.(SessionFactoryImpl.java:320)
at org.hibernate.boot.internal.SessionFactoryBuilderImpl.build(SessionFactoryBuilderImpl.java:462)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:935)
at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory(HibernatePersistenceProvider.java:141)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:365)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:391)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:378)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet(LocalContainerEntityManagerFactoryBean.java:341)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1862)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1799)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:595)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:517)
at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:323)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:321)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1108)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:868)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:550)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:401)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:292)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:103)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4685)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5146)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:717)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:690)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:705)
at org.apache.catalina.startup.HostConfig.manageApp(HostConfig.java:1728)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:289)
at java.management/com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:809)
at java.management/com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:456)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:405)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:289)
at java.management/com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:809)
at java.management/com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at java.management/com.sun.jmx.remote.security.MBeanServerAccessController.invoke(MBeanServerAccessController.java:468)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.doOperation(RMIConnectionImpl.java:1466)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl$PrivilegedOperation.run(RMIConnectionImpl.java:1307)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.doPrivilegedOperation(RMIConnectionImpl.java:1406)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.invoke(RMIConnectionImpl.java:827)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at java.rmi/sun.rmi.server.UnicastServerRef.dispatch(UnicastServerRef.java:359)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:200)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:197)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.Transport.serviceCall(Transport.java:196)
at java.rmi/sun.rmi.transport.tcp.TCPTransport.handleMessages(TCPTransport.java:562)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run0(TCPTransport.java:796)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.lambda$run$0(TCPTransport.java:677)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(TCPTransport.java:676)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.sql.SQLSyntaxErrorException: Specified key was too long; max key length is 1000 bytes
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:118)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:95)
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122)
at com.mysql.cj.jdbc.StatementImpl.executeInternal(StatementImpl.java:790)
at com.mysql.cj.jdbc.StatementImpl.execute(StatementImpl.java:675)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:194)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:194)
at org.hibernate.tool.schema.internal.exec.GenerationTargetToDatabase.accept(GenerationTargetToDatabase.java:54)
... 76 common frames omitted
2019-11-16 23:33:48.391 [RMI TCP Connection(2)-127.0.0.1] WARN o.h.t.s.i.ExceptionHandlerLoggedImpl [ExceptionHandlerLoggedImpl.java:27] GenerationTarget encountered exception accepting command : Error executing DDL "create index IDX_SP_URI_RESTYPE_NAME on HFJ_SPIDX_URI (RES_TYPE, SP_NAME)" via JDBC Statement
org.hibernate.tool.schema.spi.CommandAcceptanceException: Error executing DDL "create index IDX_SP_URI_RESTYPE_NAME on HFJ_SPIDX_URI (RES_TYPE, SP_NAME)" via JDBC Statement
at org.hibernate.tool.schema.internal.exec.GenerationTargetToDatabase.accept(GenerationTargetToDatabase.java:67)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlString(AbstractSchemaMigrator.java:559)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlStrings(AbstractSchemaMigrator.java:504)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applyIndexes(AbstractSchemaMigrator.java:331)
at org.hibernate.tool.schema.internal.GroupedSchemaMigratorImpl.performTablesMigration(GroupedSchemaMigratorImpl.java:84)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.performMigration(AbstractSchemaMigrator.java:207)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.doMigration(AbstractSchemaMigrator.java:114)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.performDatabaseAction(SchemaManagementToolCoordinator.java:184)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.process(SchemaManagementToolCoordinator.java:73)
at org.hibernate.internal.SessionFactoryImpl.(SessionFactoryImpl.java:320)
at org.hibernate.boot.internal.SessionFactoryBuilderImpl.build(SessionFactoryBuilderImpl.java:462)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:935)
at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory(HibernatePersistenceProvider.java:141)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:365)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:391)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:378)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet(LocalContainerEntityManagerFactoryBean.java:341)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1862)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1799)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:595)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:517)
at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:323)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:321)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1108)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:868)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:550)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:401)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:292)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:103)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4685)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5146)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:717)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:690)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:705)
at org.apache.catalina.startup.HostConfig.manageApp(HostConfig.java:1728)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:289)
at java.management/com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:809)
at java.management/com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:456)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:405)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:289)
at java.management/com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:809)
at java.management/com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at java.management/com.sun.jmx.remote.security.MBeanServerAccessController.invoke(MBeanServerAccessController.java:468)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.doOperation(RMIConnectionImpl.java:1466)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl$PrivilegedOperation.run(RMIConnectionImpl.java:1307)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.doPrivilegedOperation(RMIConnectionImpl.java:1406)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.invoke(RMIConnectionImpl.java:827)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at java.rmi/sun.rmi.server.UnicastServerRef.dispatch(UnicastServerRef.java:359)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:200)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:197)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.Transport.serviceCall(Transport.java:196)
at java.rmi/sun.rmi.transport.tcp.TCPTransport.handleMessages(TCPTransport.java:562)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run0(TCPTransport.java:796)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.lambda$run$0(TCPTransport.java:677)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(TCPTransport.java:676)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.sql.SQLSyntaxErrorException: Specified key was too long; max key length is 1000 bytes
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:118)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:95)
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122)
at com.mysql.cj.jdbc.StatementImpl.executeInternal(StatementImpl.java:790)
at com.mysql.cj.jdbc.StatementImpl.execute(StatementImpl.java:675)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:194)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:194)
at org.hibernate.tool.schema.internal.exec.GenerationTargetToDatabase.accept(GenerationTargetToDatabase.java:54)
... 76 common frames omitted
2019-11-16 23:33:53.094 [RMI TCP Connection(2)-127.0.0.1] WARN o.h.t.s.i.ExceptionHandlerLoggedImpl [ExceptionHandlerLoggedImpl.java:27] GenerationTarget encountered exception accepting command : Error executing DDL "alter table HFJ_RES_VER_PROV add constraint FK_RESVERPROV_RES_PID foreign key (RES_PID) references HFJ_RESOURCE (RES_ID)" via JDBC Statement
org.hibernate.tool.schema.spi.CommandAcceptanceException: Error executing DDL "alter table HFJ_RES_VER_PROV add constraint FK_RESVERPROV_RES_PID foreign key (RES_PID) references HFJ_RESOURCE (RES_ID)" via JDBC Statement
at org.hibernate.tool.schema.internal.exec.GenerationTargetToDatabase.accept(GenerationTargetToDatabase.java:67)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlString(AbstractSchemaMigrator.java:559)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlStrings(AbstractSchemaMigrator.java:504)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applyForeignKeys(AbstractSchemaMigrator.java:433)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.performMigration(AbstractSchemaMigrator.java:249)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.doMigration(AbstractSchemaMigrator.java:114)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.performDatabaseAction(SchemaManagementToolCoordinator.java:184)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.process(SchemaManagementToolCoordinator.java:73)
at org.hibernate.internal.SessionFactoryImpl.(SessionFactoryImpl.java:320)
at org.hibernate.boot.internal.SessionFactoryBuilderImpl.build(SessionFactoryBuilderImpl.java:462)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:935)
at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory(HibernatePersistenceProvider.java:141)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:365)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:391)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:378)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet(LocalContainerEntityManagerFactoryBean.java:341)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1862)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1799)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:595)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:517)
at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:323)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:321)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1108)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:868)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:550)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:401)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:292)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:103)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4685)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5146)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:717)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:690)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:705)
at org.apache.catalina.startup.HostConfig.manageApp(HostConfig.java:1728)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:289)
at java.management/com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:809)
at java.management/com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:456)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:405)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:289)
at java.management/com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:809)
at java.management/com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at java.management/com.sun.jmx.remote.security.MBeanServerAccessController.invoke(MBeanServerAccessController.java:468)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.doOperation(RMIConnectionImpl.java:1466)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl$PrivilegedOperation.run(RMIConnectionImpl.java:1307)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.doPrivilegedOperation(RMIConnectionImpl.java:1406)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.invoke(RMIConnectionImpl.java:827)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at java.rmi/sun.rmi.server.UnicastServerRef.dispatch(UnicastServerRef.java:359)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:200)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:197)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.Transport.serviceCall(Transport.java:196)
at java.rmi/sun.rmi.transport.tcp.TCPTransport.handleMessages(TCPTransport.java:562)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run0(TCPTransport.java:796)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.lambda$run$0(TCPTransport.java:677)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(TCPTransport.java:676)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.sql.SQLException: Can't create table 'FHIR.#sql-7bc4_d150ba' (errno: 150)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:127)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:95)
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122)
at com.mysql.cj.jdbc.StatementImpl.executeInternal(StatementImpl.java:790)
at com.mysql.cj.jdbc.StatementImpl.execute(StatementImpl.java:675)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:194)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:194)
at org.hibernate.tool.schema.internal.exec.GenerationTargetToDatabase.accept(GenerationTargetToDatabase.java:54)
... 75 common frames omitted
2019-11-16 23:33:53.196 [RMI TCP Connection(2)-127.0.0.1] WARN o.h.t.s.i.ExceptionHandlerLoggedImpl [ExceptionHandlerLoggedImpl.java:27] GenerationTarget encountered exception accepting command : Error executing DDL "alter table HFJ_RES_VER_PROV add constraint FK_RESVERPROV_RESVER_PID foreign key (RES_VER_PID) references HFJ_RES_VER (PID)" via JDBC Statement
org.hibernate.tool.schema.spi.CommandAcceptanceException: Error executing DDL "alter table HFJ_RES_VER_PROV add constraint FK_RESVERPROV_RESVER_PID foreign key (RES_VER_PID) references HFJ_RES_VER (PID)" via JDBC Statement
at org.hibernate.tool.schema.internal.exec.GenerationTargetToDatabase.accept(GenerationTargetToDatabase.java:67)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlString(AbstractSchemaMigrator.java:559)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlStrings(AbstractSchemaMigrator.java:504)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applyForeignKeys(AbstractSchemaMigrator.java:433)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.performMigration(AbstractSchemaMigrator.java:249)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.doMigration(AbstractSchemaMigrator.java:114)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.performDatabaseAction(SchemaManagementToolCoordinator.java:184)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.process(SchemaManagementToolCoordinator.java:73)
at org.hibernate.internal.SessionFactoryImpl.(SessionFactoryImpl.java:320)
at org.hibernate.boot.internal.SessionFactoryBuilderImpl.build(SessionFactoryBuilderImpl.java:462)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:935)
at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory(HibernatePersistenceProvider.java:141)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:365)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:391)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:378)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet(LocalContainerEntityManagerFactoryBean.java:341)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1862)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1799)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:595)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:517)
at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:323)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:321)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1108)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:868)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:550)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:401)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:292)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:103)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4685)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5146)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:717)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:690)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:705)
at org.apache.catalina.startup.HostConfig.manageApp(HostConfig.java:1728)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:289)
at java.management/com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:809)
at java.management/com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:456)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:405)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:289)
at java.management/com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:809)
at java.management/com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at java.management/com.sun.jmx.remote.security.MBeanServerAccessController.invoke(MBeanServerAccessController.java:468)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.doOperation(RMIConnectionImpl.java:1466)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl$PrivilegedOperation.run(RMIConnectionImpl.java:1307)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.doPrivilegedOperation(RMIConnectionImpl.java:1406)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.invoke(RMIConnectionImpl.java:827)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at java.rmi/sun.rmi.server.UnicastServerRef.dispatch(UnicastServerRef.java:359)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:200)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:197)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.Transport.serviceCall(Transport.java:196)
at java.rmi/sun.rmi.transport.tcp.TCPTransport.handleMessages(TCPTransport.java:562)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run0(TCPTransport.java:796)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.lambda$run$0(TCPTransport.java:677)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(TCPTransport.java:676)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.sql.SQLException: Can't create table 'FHIR.#sql-7bc4_d150ba' (errno: 150)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:127)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:95)
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122)
at com.mysql.cj.jdbc.StatementImpl.executeInternal(StatementImpl.java:790)
at com.mysql.cj.jdbc.StatementImpl.execute(StatementImpl.java:675)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:194)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:194)
at org.hibernate.tool.schema.internal.exec.GenerationTargetToDatabase.accept(GenerationTargetToDatabase.java:54)
... 75 common frames omitted
2019-11-16 23:33:56.323 [RMI TCP Connection(2)-127.0.0.1] WARN o.h.t.s.i.ExceptionHandlerLoggedImpl [ExceptionHandlerLoggedImpl.java:27] GenerationTarget encountered exception accepting command : Error executing DDL "alter table TRM_CODESYSTEM add constraint FK_TRMCODESYSTEM_RES foreign key (RES_ID) references HFJ_RESOURCE (RES_ID)" via JDBC Statement
org.hibernate.tool.schema.spi.CommandAcceptanceException: Error executing DDL "alter table TRM_CODESYSTEM add constraint FK_TRMCODESYSTEM_RES foreign key (RES_ID) references HFJ_RESOURCE (RES_ID)" via JDBC Statement
at org.hibernate.tool.schema.internal.exec.GenerationTargetToDatabase.accept(GenerationTargetToDatabase.java:67)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlString(AbstractSchemaMigrator.java:559)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlStrings(AbstractSchemaMigrator.java:504)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applyForeignKeys(AbstractSchemaMigrator.java:433)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.performMigration(AbstractSchemaMigrator.java:249)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.doMigration(AbstractSchemaMigrator.java:114)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.performDatabaseAction(SchemaManagementToolCoordinator.java:184)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.process(SchemaManagementToolCoordinator.java:73)
at org.hibernate.internal.SessionFactoryImpl.(SessionFactoryImpl.java:320)
at org.hibernate.boot.internal.SessionFactoryBuilderImpl.build(SessionFactoryBuilderImpl.java:462)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:935)
at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory(HibernatePersistenceProvider.java:141)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:365)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:391)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:378)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet(LocalContainerEntityManagerFactoryBean.java:341)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1862)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1799)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:595)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:517)
at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:323)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:321)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1108)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:868)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:550)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:401)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:292)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:103)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4685)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5146)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:717)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:690)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:705)
at org.apache.catalina.startup.HostConfig.manageApp(HostConfig.java:1728)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:289)
at java.management/com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:809)
at java.management/com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:456)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:405)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:289)
at java.management/com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:809)
at java.management/com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at java.management/com.sun.jmx.remote.security.MBeanServerAccessController.invoke(MBeanServerAccessController.java:468)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.doOperation(RMIConnectionImpl.java:1466)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl$PrivilegedOperation.run(RMIConnectionImpl.java:1307)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.doPrivilegedOperation(RMIConnectionImpl.java:1406)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.invoke(RMIConnectionImpl.java:827)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at java.rmi/sun.rmi.server.UnicastServerRef.dispatch(UnicastServerRef.java:359)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:200)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:197)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.Transport.serviceCall(Transport.java:196)
at java.rmi/sun.rmi.transport.tcp.TCPTransport.handleMessages(TCPTransport.java:562)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run0(TCPTransport.java:796)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.lambda$run$0(TCPTransport.java:677)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(TCPTransport.java:676)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.sql.SQLException: Can't create table 'FHIR.#sql-7bc4_d150ba' (errno: 150)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:127)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:95)
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122)
at com.mysql.cj.jdbc.StatementImpl.executeInternal(StatementImpl.java:790)
at com.mysql.cj.jdbc.StatementImpl.execute(StatementImpl.java:675)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:194)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:194)
at org.hibernate.tool.schema.internal.exec.GenerationTargetToDatabase.accept(GenerationTargetToDatabase.java:54)
... 75 common frames omitted
2019-11-16 23:33:56.780 [RMI TCP Connection(2)-127.0.0.1] WARN o.h.t.s.i.ExceptionHandlerLoggedImpl [ExceptionHandlerLoggedImpl.java:27] GenerationTarget encountered exception accepting command : Error executing DDL "alter table TRM_CODESYSTEM_VER add constraint FK_CODESYSVER_RES_ID foreign key (RES_ID) references HFJ_RESOURCE (RES_ID)" via JDBC Statement
org.hibernate.tool.schema.spi.CommandAcceptanceException: Error executing DDL "alter table TRM_CODESYSTEM_VER add constraint FK_CODESYSVER_RES_ID foreign key (RES_ID) references HFJ_RESOURCE (RES_ID)" via JDBC Statement
at org.hibernate.tool.schema.internal.exec.GenerationTargetToDatabase.accept(GenerationTargetToDatabase.java:67)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlString(AbstractSchemaMigrator.java:559)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlStrings(AbstractSchemaMigrator.java:504)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applyForeignKeys(AbstractSchemaMigrator.java:433)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.performMigration(AbstractSchemaMigrator.java:249)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.doMigration(AbstractSchemaMigrator.java:114)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.performDatabaseAction(SchemaManagementToolCoordinator.java:184)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.process(SchemaManagementToolCoordinator.java:73)
at org.hibernate.internal.SessionFactoryImpl.(SessionFactoryImpl.java:320)
at org.hibernate.boot.internal.SessionFactoryBuilderImpl.build(SessionFactoryBuilderImpl.java:462)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:935)
at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory(HibernatePersistenceProvider.java:141)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:365)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:391)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:378)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet(LocalContainerEntityManagerFactoryBean.java:341)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1862)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1799)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:595)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:517)
at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:323)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:321)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1108)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:868)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:550)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:401)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:292)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:103)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4685)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5146)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:717)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:690)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:705)
at org.apache.catalina.startup.HostConfig.manageApp(HostConfig.java:1728)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:289)
at java.management/com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:809)
at java.management/com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:456)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:405)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:289)
at java.management/com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:809)
at java.management/com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at java.management/com.sun.jmx.remote.security.MBeanServerAccessController.invoke(MBeanServerAccessController.java:468)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.doOperation(RMIConnectionImpl.java:1466)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl$PrivilegedOperation.run(RMIConnectionImpl.java:1307)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.doPrivilegedOperation(RMIConnectionImpl.java:1406)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.invoke(RMIConnectionImpl.java:827)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at java.rmi/sun.rmi.server.UnicastServerRef.dispatch(UnicastServerRef.java:359)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:200)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:197)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.Transport.serviceCall(Transport.java:196)
at java.rmi/sun.rmi.transport.tcp.TCPTransport.handleMessages(TCPTransport.java:562)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run0(TCPTransport.java:796)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.lambda$run$0(TCPTransport.java:677)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(TCPTransport.java:676)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.sql.SQLException: Can't create table 'FHIR.#sql-7bc4_d150ba' (errno: 150)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:127)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:95)
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122)
at com.mysql.cj.jdbc.StatementImpl.executeInternal(StatementImpl.java:790)
at com.mysql.cj.jdbc.StatementImpl.execute(StatementImpl.java:675)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:194)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:194)
at org.hibernate.tool.schema.internal.exec.GenerationTargetToDatabase.accept(GenerationTargetToDatabase.java:54)
... 75 common frames omitted
2019-11-16 23:33:57.685 [RMI TCP Connection(2)-127.0.0.1] WARN o.h.t.s.i.ExceptionHandlerLoggedImpl [ExceptionHandlerLoggedImpl.java:27] GenerationTarget encountered exception accepting command : Error executing DDL "alter table TRM_CONCEPT_MAP add constraint FK_TRMCONCEPTMAP_RES foreign key (RES_ID) references HFJ_RESOURCE (RES_ID)" via JDBC Statement
org.hibernate.tool.schema.spi.CommandAcceptanceException: Error executing DDL "alter table TRM_CONCEPT_MAP add constraint FK_TRMCONCEPTMAP_RES foreign key (RES_ID) references HFJ_RESOURCE (RES_ID)" via JDBC Statement
at org.hibernate.tool.schema.internal.exec.GenerationTargetToDatabase.accept(GenerationTargetToDatabase.java:67)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlString(AbstractSchemaMigrator.java:559)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlStrings(AbstractSchemaMigrator.java:504)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applyForeignKeys(AbstractSchemaMigrator.java:433)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.performMigration(AbstractSchemaMigrator.java:249)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.doMigration(AbstractSchemaMigrator.java:114)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.performDatabaseAction(SchemaManagementToolCoordinator.java:184)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.process(SchemaManagementToolCoordinator.java:73)
at org.hibernate.internal.SessionFactoryImpl.(SessionFactoryImpl.java:320)
at org.hibernate.boot.internal.SessionFactoryBuilderImpl.build(SessionFactoryBuilderImpl.java:462)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:935)
at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory(HibernatePersistenceProvider.java:141)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:365)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:391)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:378)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet(LocalContainerEntityManagerFactoryBean.java:341)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1862)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1799)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:595)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:517)
at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:323)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:321)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1108)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:868)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:550)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:401)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:292)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:103)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4685)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5146)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:717)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:690)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:705)
at org.apache.catalina.startup.HostConfig.manageApp(HostConfig.java:1728)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:289)
at java.management/com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:809)
at java.management/com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:456)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:405)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:289)
at java.management/com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:809)
at java.management/com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at java.management/com.sun.jmx.remote.security.MBeanServerAccessController.invoke(MBeanServerAccessController.java:468)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.doOperation(RMIConnectionImpl.java:1466)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl$PrivilegedOperation.run(RMIConnectionImpl.java:1307)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.doPrivilegedOperation(RMIConnectionImpl.java:1406)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.invoke(RMIConnectionImpl.java:827)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at java.rmi/sun.rmi.server.UnicastServerRef.dispatch(UnicastServerRef.java:359)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:200)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:197)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.Transport.serviceCall(Transport.java:196)
at java.rmi/sun.rmi.transport.tcp.TCPTransport.handleMessages(TCPTransport.java:562)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run0(TCPTransport.java:796)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.lambda$run$0(TCPTransport.java:677)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(TCPTransport.java:676)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.sql.SQLException: Can't create table 'FHIR.#sql-7bc4_d150ba' (errno: 150)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:127)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:95)
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122)
at com.mysql.cj.jdbc.StatementImpl.executeInternal(StatementImpl.java:790)
at com.mysql.cj.jdbc.StatementImpl.execute(StatementImpl.java:675)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:194)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:194)
at org.hibernate.tool.schema.internal.exec.GenerationTargetToDatabase.accept(GenerationTargetToDatabase.java:54)
... 75 common frames omitted
2019-11-16 23:33:59.849 [RMI TCP Connection(2)-127.0.0.1] WARN o.h.t.s.i.ExceptionHandlerLoggedImpl [ExceptionHandlerLoggedImpl.java:27] GenerationTarget encountered exception accepting command : Error executing DDL "alter table TRM_VALUESET add constraint FK_TRMVALUESET_RES foreign key (RES_ID) references HFJ_RESOURCE (RES_ID)" via JDBC Statement
org.hibernate.tool.schema.spi.CommandAcceptanceException: Error executing DDL "alter table TRM_VALUESET add constraint FK_TRMVALUESET_RES foreign key (RES_ID) references HFJ_RESOURCE (RES_ID)" via JDBC Statement
at org.hibernate.tool.schema.internal.exec.GenerationTargetToDatabase.accept(GenerationTargetToDatabase.java:67)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlString(AbstractSchemaMigrator.java:559)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applySqlStrings(AbstractSchemaMigrator.java:504)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.applyForeignKeys(AbstractSchemaMigrator.java:433)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.performMigration(AbstractSchemaMigrator.java:249)
at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.doMigration(AbstractSchemaMigrator.java:114)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.performDatabaseAction(SchemaManagementToolCoordinator.java:184)
at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.process(SchemaManagementToolCoordinator.java:73)
at org.hibernate.internal.SessionFactoryImpl.(SessionFactoryImpl.java:320)
at org.hibernate.boot.internal.SessionFactoryBuilderImpl.build(SessionFactoryBuilderImpl.java:462)
at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:935)
at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory(HibernatePersistenceProvider.java:141)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:365)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:391)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:378)
at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet(LocalContainerEntityManagerFactoryBean.java:341)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1862)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1799)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:595)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:517)
at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:323)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:321)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1108)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:868)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:550)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:401)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:292)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:103)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4685)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5146)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:717)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:690)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:705)
at org.apache.catalina.startup.HostConfig.manageApp(HostConfig.java:1728)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:289)
at java.management/com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:809)
at java.management/com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:456)
at org.apache.catalina.mbeans.MBeanFactory.createStandardContext(MBeanFactory.java:405)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.apache.tomcat.util.modeler.BaseModelMBean.invoke(BaseModelMBean.java:289)
at java.management/com.sun.jmx.interceptor.DefaultMBeanServerInterceptor.invoke(DefaultMBeanServerInterceptor.java:809)
at java.management/com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:801)
at java.management/com.sun.jmx.remote.security.MBeanServerAccessController.invoke(MBeanServerAccessController.java:468)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.doOperation(RMIConnectionImpl.java:1466)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl$PrivilegedOperation.run(RMIConnectionImpl.java:1307)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.doPrivilegedOperation(RMIConnectionImpl.java:1406)
at java.management.rmi/javax.management.remote.rmi.RMIConnectionImpl.invoke(RMIConnectionImpl.java:827)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at java.rmi/sun.rmi.server.UnicastServerRef.dispatch(UnicastServerRef.java:359)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:200)
at java.rmi/sun.rmi.transport.Transport$1.run(Transport.java:197)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.Transport.serviceCall(Transport.java:196)
at java.rmi/sun.rmi.transport.tcp.TCPTransport.handleMessages(TCPTransport.java:562)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run0(TCPTransport.java:796)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.lambda$run$0(TCPTransport.java:677)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.rmi/sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(TCPTransport.java:676)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.sql.SQLException: Can't create table 'FHIR.#sql-7bc4_d150ba' (errno: 150)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:127)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:95)
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.java:122)
at com.mysql.cj.jdbc.StatementImpl.executeInternal(StatementImpl.java:790)
at com.mysql.cj.jdbc.StatementImpl.execute(StatementImpl.java:675)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:194)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:194)
at org.hibernate.tool.schema.internal.exec.GenerationTargetToDatabase.accept(GenerationTargetToDatabase.java:54)
... 75 common frames omitted
I followed the example in the readme.md
without success, Since we use innodb I changed the dialect to hibernate.dialect=org.hibernate.dialect.MySQL5InnoDBDialect
and still no success:
Caused by: java.sql.SQLSyntaxErrorException: Specified key was too long; max key length is 1000 bytes
o.h.t.s.i.ExceptionHandlerLoggedImpl [ExceptionHandlerLoggedImpl.java:27] GenerationTarget encountered exception accepting command : Error executing DDL "create index IDX_SP_URI_RESTYPE_NAME on HFJ_SPIDX_URI (RES_TYPE, SP_NAME)" via JDBC Statement
org.hibernate.tool.schema.spi.CommandAcceptanceException: Error executing DDL "create index IDX_SP_URI_RESTYPE_NAME on HFJ_SPIDX_URI (RES_TYPE, SP_NAME)" via JDBC Statement
This is far from my expertise and I have no idea how to dive deeper into this issue to provide some more useful information
I have set enforce_referential_integrity_on_write=true
and have observed the jpa server reject any resource that references another resource that does not locally exist.
However, if I provide an absolute URL in the reference path it will successfully write the object no matter what. This occurs even when the provided absolute url points to the local jpa server.
I am running version 4.2.0 and have only modified fields in the hapi.properties file.
I am running jpa server in docker container tomcat:9-jre11 running on Ubuntu 18.04
This is the bundle I am using to create the object:
{
"resourceType": "Bundle",
"id": "bundle-transaction",
"meta": {
"lastUpdated": "2014-08-18T01:43:30Z"
},
"type": "transaction",
"entry": [
{
"fullUrl": "urn:uuid:61ebe359-bfdc-4613-8bf2-c5e300945f0a",
"resource": {
"resourceType": "Organization",
"id": "hl7",
"text": {
"status": "generated",
"div": "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n Health Level Seven International\n <br/>\n\t\t\t\t3300 Washtenaw Avenue, Suite 227\n <br/>\n\t\t\t\tAnn Arbor, MI 48104\n <br/>\n\t\t\t\tUSA\n <br/>\n\t\t\t\t(+1) 734-677-7777 (phone)\n <br/>\n\t\t\t\t(+1) 734-677-6622 (fax)\n <br/>\n\t\t\t\tE-mail: \n <a href=\"mailto:[email protected]\">[email protected]</a>\n \n </div>"
},
"name": "Health Level Seven International",
"alias": [
"HL7 International"
],
"telecom": [
{
"system": "phone",
"value": "(+1) 734-677-7777"
},
{
"system": "fax",
"value": "(+1) 734-677-6622"
},
{
"system": "email",
"value": "[email protected]"
}
],
"address": [
{
"line": [
"3300 Washtenaw Avenue, Suite 227"
],
"city": "Ann Arbor",
"state": "MI",
"postalCode": "48104",
"country": "USA"
}
],
"endpoint": [
{
"reference": "http://localhost:8080/hapi-fhir-jpaserver/fhir/Endpoint/wrong"
}
]
},
"request": {
"method": "PUT",
"url": "Organization/hl7"
}
}
]
}
Here is my hapi.properties:
# Adjust this to set the version of FHIR supported by this server. See
# FhirVersionEnum for a list of available constants. Example values include
# DSTU2, DSTU3, R4.
fhir_version=R4
# This is the address that the FHIR server will report as its own address.
# If this server will be deployed (for example) to an internet accessible
# server, put the DNS name of that server here.
#
# Note that this is also the address that the hapi-fhir-testpage-overlay
# (the web UI similar to the one at http://hapi.fhir.org) will use to
# connect internally to the FHIR server, so this also needs to be a name
# accessible from the server itself.
server_address=http://localhost:8080/hapi-fhir-jpaserver/fhir/
enable_index_missing_fields=false
auto_create_placeholder_reference_targets=false
enforce_referential_integrity_on_write=true
enforce_referential_integrity_on_delete=true
default_encoding=JSON
etag_support=ENABLED
reuse_cached_search_results_millis=60000
retain_cached_searches_mins=60
default_page_size=20
max_page_size=200
allow_override_default_search_params=true
allow_contains_searches=true
allow_multiple_delete=true
allow_external_references=true
allow_cascading_deletes=true
allow_placeholder_references=false
expunge_enabled=true
persistence_unit_name=HAPI_PU
logger.name=fhirtest.access
logger.format=Path[${servletPath}] Source[${requestHeader.x-forwarded-for}] Operation[${operationType} ${operationName} ${idOrResourceName}] UA[${requestHeader.user-agent}] Params[${requestParameters}] ResponseEncoding[${responseEncodingNoDefault}]
logger.error_format=ERROR - ${requestVerb} ${requestUrl}
logger.log_exceptions=true
datasource.driver=org.h2.Driver
datasource.url=jdbc:h2:file:./target/database/h2
datasource.username=
datasource.password=
server.name=Local Tester
server.id=home
test.port=
###################################################
# Binary Storage (104857600 = 100mb)
###################################################
max_binary_size=104857600
###################################################
# Validation
###################################################
# Should all incoming requests be validated
validation.requests.enabled=false
# Should outgoing responses be validated
validation.responses.enabled=false
###################################################
# Search Features
###################################################
filter_search.enabled=true
graphql.enabled=true
###################################################
# Supported Resources
###################################################
# Enable the following property if you want to customize the
# list of resources that is supported by the server (i.e. to
# disable specific resources)
#supported_resource_types=Patient,Observation,Encounter
###################################################
# Database Settings
###################################################
hibernate.dialect=org.hibernate.dialect.H2Dialect
hibernate.search.model_mapping=ca.uhn.fhir.jpa.search.LuceneSearchMappingFactory
hibernate.format_sql=false
hibernate.show_sql=false
hibernate.hbm2ddl.auto=update
hibernate.jdbc.batch_size=20
hibernate.cache.use_query_cache=false
hibernate.cache.use_second_level_cache=false
hibernate.cache.use_structured_entries=false
hibernate.cache.use_minimal_puts=false
hibernate.search.default.directory_provider=filesystem
hibernate.search.default.indexBase=target/lucenefiles
hibernate.search.lucene_version=LUCENE_CURRENT
tester.config.refuse_to_fetch_third_party_urls=false
##################################################
# ElasticSearch
# Note that using ElasticSearch is disabled by
# default and the server will use Lucene instead.
##################################################
elasticsearch.enabled=false
elasticsearch.rest_url=http://localhost:9200
elasticsearch.username=SomeUsername
elasticsearch.password=SomePassword
elasticsearch.required_index_status=YELLOW
elasticsearch.schema_management_strategy=CREATE
# Immediately refresh indexes after every write. This is very bad for
# performance, but can be helpful for testing.
elasticsearch.debug.refresh_after_write=false
elasticsearch.debug.pretty_print_json_log=false
##################################################
# Binary Storage Operations
##################################################
binary_storage.enabled=true
##################################################
# Bulk Data Specification
##################################################
bulk.export.enabled=true
##################################################
# CORS Settings
##################################################
cors.enabled=true
cors.allowCredentials=true
# Supports multiple, comma separated allowed origin entries
# cors.allowed_origin=http://localhost:8080,https://localhost:8080,https://fhirtest.uhn.ca
cors.allow_origin=*
##################################################
# Allowed Bundle Types for persistence (defaults are: COLLECTION,DOCUMENT,MESSAGE)
##################################################
#allowed_bundle_types=COLLECTION,DOCUMENT,MESSAGE,TRANSACTION,TRANSACTIONRESPONSE,BATCH,BATCHRESPONSE,HISTORY,SEARCHSET
##################################################
# Subscriptions
##################################################
# Enable REST Hook Subscription Channel
subscription.resthook.enabled=true
# Enable Email Subscription Channel
subscription.email.enabled=false
email.enabled=false
[email protected]
email.host=
email.port=0
email.username=
email.password=
# Enable Websocket Subscription Channel
subscription.websocket.enabled=false
I've followed the steps to 'Deploy with docker compose'. Both times the build has failed but due to different reasons. First time it failed at 'HAPI FHIR - Command Line Client - API .' because it couldn't find the mysql connector (even though it was on the central maven repo). The second time it failed, it failed before reaching the first failure point, namely 'HAPI FHIR - fhirtest.uhn.ca Deployable WAR'.
Both times however, the build via docker compose is taking over 2h. Has anyone else had this issue where it takes so long?
In the current rel_4_0_0 branch, you have an implicit relative path which is disabled by default in H2:
IMPLICIT_RELATIVE_PATH
System property h2.implicitRelativePath (default: false).
If disabled, relative paths in database URLs need to be written as jdbc:h2:./test instead of jdbc:h2:test.
The exception is: Caused by: java.sql.SQLException: Cannot create PoolableConnectionFactory (A file path that is implicitly relative to the current working directory is not allowed in the database URL "jdbc:h2:file:target/jpaserver_derby_files". Use an absolute path, ~/name, ./name, or the baseDir setting instead. [90011-199])
Therefore, to run the server with H2, you need to change
datasource.url=jdbc:h2:file:target/jpaserver_derby_files
to something like
datasource.url=jdbc:h2:file:./target/database/h2
I am using the open source HAPI FHIR server by way of deploying the jpaserver-starter and I'm trying to keep up with the releases. Normally I’d expect to see tags for this, but I don't see those for this project. Aside from inspecting the pom.xml, what indicator or marker is used to designate new releases of the hapi-fhir-jpaserver-starter project?
I am running JPA Starter Server using Docker and looking for a way to specify datasource.url
using environment variable, so far I have tried using
datasource.url=${POSTGRES_URL}
in properties file. And setting corresponding environment variable using docker run -e POSTGRES_URL=jdbc:postgresql://XXXX:5432/hapi
but this does not work.
Any idea on how to make it work?
Do I need to provide my custom implementation ? or is there a system property I can override (I am not a Java pro so I may be missing something obvious to everyone else)
Checked out and built the latest version today. When I populate R4 Encounters that contain reason CodeableConcepts, these are not stored nor are they returned by the server. All of the other fields in this resource seem to be behaving correctly.
Here's a screen shot from my debugger showing the FHIR resource that was posted:
And here's a screen shot of my browser showing that the reason was not stored:
Following the README, I clone the project and then perform the following steps:
mvn install
- no issues heremvn jetty:run
- no issues; I'm able to access the web UI as expected. This is using Derby as indicated in the README.docker run --name hapi-mysql -e MYSQL_ROOT_PASSWORD=mypassword -p 3306:3306 -d mysql:5
CREATE USER 'hapiDbUser'@'localhost' IDENTIFIED BY 'hapiDbPass';
CREATE DATABASE hapi_dstu3;
GRANT ALL PRIVILEGES ON hapi_dstu3.* to 'hapiDbUser'@'localhost';
FLUSH PRIVILEGES;
Success! Everything looks good thus far.
hapi.properties
file as indicated in the READMEdatasource.driver=com.mysql.cj.jdbc.Driver
datasource.url=jdbc:mysql://localhost:3306/hapi_dstu3
datasource.username=hapiDbUser
datasource.password=hapiDbPass
hibernate.dialect=org.hibernate.dialect.MySQL5Dialect
Save and mvn install
....
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-failsafe-plugin:2.21.0:verify (default) on project hapi-fhir-jpaserver-starter: There are test failures.
Retrieve log from target/classes/failsafe-reports
. Here's the critical error message in the log file that I'm seeing (happy to provide the entire file contents if helpful):
java.sql.SQLException: Cannot create PoolableConnectionFactory (Cannot load connection class because of underlying exception: com.mysql.cj.core.exceptions.WrongArgumentException: Malformed database URL, failed to parse the main URL sections.)
I've reviewed the database URL ad nauseam and have been unable to identify any apparent issues. I've also attempted to connect to an RDS MySQL instance to no avail. I'm able to connect to the DB instance without issue using both the CLI and a SQL client. Additionally, I had a developer colleague attempt to connect this to MySQL following the README instructions as a sanity check and encountered the same error.
See file https://github.com/hapifhir/hapi-fhir-jpaserver-starter/blob/master/src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigCommon.java on line 95 and 102.
setAutoCreatePlaceholderReferenceTargets is being called twice and (obviously) only acting upon allowPlaceholderReferences variable in hapi.properties.
Is this intended?
When defining supported_resource_types in hapi.properties, generation of the CapabilityStatement fails, unless SearchParameter is contained in the supported_resource_types.
I had a problem running docker-compose with the mysql database set as in the docker-compose.yml
. As image, there is stated to use mysql:latest
, which currently is version 8.0.11. That causes that the hapi-fhir-jpaserver-start
container cannot establish a connection to the linked mysqld
in the hapi-fhir-mysql
container.
A solution would be to set the used image to version 5 (mysql:5
) in docker-compose.yml
, or to change the dependency in pom.xml
to
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
<version>8.0.11</version>
</dependency>
The first option would also prevent further issues when the latest mysql version changes at the docker hub.
It would be very nice to have an "official" hapi-fhir-jpaserver-starter docker images published to docker hub or quay so people can easily try it or use it with testcontainers for integration tests
I'm trying to load the first LINK_NEXT page returned by a query with the following code from a v4.2.0 HAPI-FHIR server using hapi-fhir-client-4.2.0.jar and I'm getting this exception which seems wrong, since the server reports it's FHIR version is "4.0.1" in it's metadata. It worked with v4.0.0 and I've been writing resources to this server for weeks. I just cannot read them all back.
Any help would be appreciated.
public List<IBaseResource> getEntries(IBaseBundle baseBundle, IGenericClient client) {
List<IBaseResource> list = new ArrayList<>();
Bundle bundle = (Bundle) baseBundle;
for (BundleEntryComponent comp : bundle.getEntry()) {
IBaseResource m = comp.getResource();
list.add(m);
}
while (bundle.getLink(Bundle.LINK_NEXT) != null) {
bundle = client.loadPage().next(bundle).execute();
for (BundleEntryComponent comp : bundle.getEntry()) {
IBaseResource m = comp.getResource();
list.add(m);
}
}
return list;
}
Exception in thread "main" ca.uhn.fhir.rest.client.exceptions.FhirClientConnectionException: Failed to retrieve the server metadata statement during client initialization. URL used was http://localhost:8380/hapi-fhir-jpaserver/fhir/metadata
at ca.uhn.fhir.rest.client.impl.RestfulClientFactory.validateServerBase(RestfulClientFactory.java:312)
at ca.uhn.fhir.rest.client.impl.RestfulClientFactory.validateServerBaseIfConfiguredToDoSo(RestfulClientFactory.java:264)
at ca.uhn.fhir.rest.client.impl.BaseClient.invokeClient(BaseClient.java:227)
at ca.uhn.fhir.rest.client.impl.GenericClient$BaseClientExecutable.invoke(GenericClient.java:434)
at ca.uhn.fhir.rest.client.impl.GenericClient$GetPageInternal.execute(GenericClient.java:734)
at org.mihin.patientgen.export.FhirR4Converter.getEntries(FhirR4Converter.java:484)
at org.mihin.patientgen.servers.FhirServer.getAllResources(FhirServer.java:460)
at org.mihin.patientgen.RingPatcher.main(RingPatcher.java:26)
Caused by: ca.uhn.fhir.rest.client.exceptions.FhirClientConnectionException: Failed to parse response from server when performing GET to URL http://localhost:8380/hapi-fhir-jpaserver/fhir/metadata - ca.uhn.fhir.parser.DataFormatException: Invalid attribute value "4.0.1": Unknown FHIRVersion code '4.0.1'
at ca.uhn.fhir.rest.client.impl.BaseClient.invokeClient(BaseClient.java:392)
at ca.uhn.fhir.rest.client.impl.GenericClient$BaseClientExecutable.invoke(GenericClient.java:434)
at ca.uhn.fhir.rest.client.impl.GenericClient$FetchConformanceInternal.execute(GenericClient.java:701)
at ca.uhn.fhir.rest.client.impl.RestfulClientFactory.validateServerBase(RestfulClientFactory.java:305)
... 7 more
Caused by: ca.uhn.fhir.parser.DataFormatException: Invalid attribute value "4.0.1": Unknown FHIRVersion code '4.0.1'
at ca.uhn.fhir.parser.StrictErrorHandler.invalidValue(StrictErrorHandler.java:49)
at ca.uhn.fhir.parser.LenientErrorHandler.invalidValue(LenientErrorHandler.java:90)
at ca.uhn.fhir.parser.ParserState$PrimitiveState.attributeValue(ParserState.java:1286)
at ca.uhn.fhir.parser.ParserState.attributeValue(ParserState.java:85)
at ca.uhn.fhir.parser.JsonParser.parseChildren(JsonParser.java:1110)
at ca.uhn.fhir.parser.JsonParser.parseChildren(JsonParser.java:1015)
at ca.uhn.fhir.parser.JsonParser.doParseResource(JsonParser.java:196)
at ca.uhn.fhir.parser.JsonParser.doParseResource(JsonParser.java:178)
at ca.uhn.fhir.parser.BaseParser.parseResource(BaseParser.java:710)
at ca.uhn.fhir.parser.BaseParser.parseResource(BaseParser.java:695)
at ca.uhn.fhir.rest.client.impl.BaseClient$ResourceResponseHandler.invokeClient(BaseClient.java:580)
at ca.uhn.fhir.rest.client.impl.BaseClient$ResourceResponseHandler.invokeClient(BaseClient.java:532)
at ca.uhn.fhir.rest.client.impl.BaseClient.invokeClient(BaseClient.java:382)
... 10 more
Hi, I'm trying to compile rel_5_0_0 branch but got the following errors. Is it ready to be deployed yet? Thank you!
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.8.1:compile (default-compile) on project hapi-fhir-jpaserver-starter: Compilation failure: Compilation failure:
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigCommon.java:[5,26] error: cannot find symbol
[ERROR] symbol: class DaoConfig
[ERROR] location: package ca.uhn.fhir.jpa.dao
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigCommon.java:[7,50] error: package ca.uhn.fhir.jpa.subscription.module.channel does not exist
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigCommon.java:[8,59] error: package ca.uhn.fhir.jpa.subscription.module.subscriber.email does not exist
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigCommon.java:[9,59] error: package ca.uhn.fhir.jpa.subscription.module.subscriber.email does not exist
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigCommon.java:[55,10] error: cannot find symbol
[ERROR] symbol: class SubscriptionDeliveryHandlerFactory
[ERROR] location: class FhirServerConfigCommon
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigCommon.java:[91,9] error: cannot find symbol
[ERROR] symbol: class DaoConfig
[ERROR] location: class FhirServerConfigCommon
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigCommon.java:[186,9] error: cannot find symbol
[ERROR] symbol: class IEmailSender
[ERROR] location: class FhirServerConfigCommon
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[9,26] error: cannot find symbol
[ERROR] symbol: class DaoConfig
[ERROR] location: package ca.uhn.fhir.jpa.dao
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[10,26] error: cannot find symbol
[ERROR] symbol: class DaoRegistry
[ERROR] location: package ca.uhn.fhir.jpa.dao
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[11,26] error: cannot find symbol
[ERROR] symbol: class IFhirSystemDao
[ERROR] location: package ca.uhn.fhir.jpa.dao
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[25,35] error: package ca.uhn.fhir.jpa.subscription does not exist
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[26,54] error: package ca.uhn.fhir.jpa.subscription.module.interceptor does not exist
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[27,27] error: cannot find symbol
[ERROR] symbol: class ResourceProviderFactory
[ERROR] location: package ca.uhn.fhir.jpa.util
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/ApplicationContext.java:[23,43] error: cannot find symbol
[ERROR] symbol: class WebsocketDispatcherConfig
[ERROR] location: package ca.uhn.fhir.jpa.config
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigCommon.java:[92,4] error: cannot find symbol
[ERROR] symbol: class DaoConfig
[ERROR] location: class FhirServerConfigCommon
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigCommon.java:[92,27] error: cannot find symbol
[ERROR] symbol: class DaoConfig
[ERROR] location: class FhirServerConfigCommon
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigCommon.java:[94,74] error: package DaoConfig does not exist
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigCommon.java:[94,111] error: package DaoConfig does not exist
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigCommon.java:[188,6] error: cannot find symbol
[ERROR] symbol: class JavaMailEmailSender
[ERROR] location: class FhirServerConfigCommon
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/FhirServerConfigCommon.java:[188,39] error: cannot find symbol
[ERROR] symbol: class JavaMailEmailSender
[ERROR] location: class FhirServerConfigCommon
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[76,6] error: cannot find symbol
[ERROR] symbol: class DaoRegistry
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[76,47] error: cannot find symbol
[ERROR] symbol: class DaoRegistry
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[84,4] error: cannot find symbol
[ERROR] symbol: class ResourceProviderFactory
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[87,69] error: cannot find symbol
[ERROR] symbol: class ResourceProviderFactory
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[90,69] error: cannot find symbol
[ERROR] symbol: class ResourceProviderFactory
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[93,66] error: cannot find symbol
[ERROR] symbol: class ResourceProviderFactory
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[96,66] error: cannot find symbol
[ERROR] symbol: class ResourceProviderFactory
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[116,6] error: cannot find symbol
[ERROR] symbol: class IFhirSystemDao
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[117,39] error: cannot find symbol
[ERROR] symbol: class IFhirSystemDao
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[119,25] error: cannot find symbol
[ERROR] symbol: class DaoConfig
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[123,6] error: cannot find symbol
[ERROR] symbol: class IFhirSystemDao
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[124,39] error: cannot find symbol
[ERROR] symbol: class IFhirSystemDao
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[126,25] error: cannot find symbol
[ERROR] symbol: class DaoConfig
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[130,6] error: cannot find symbol
[ERROR] symbol: class IFhirSystemDao
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[131,36] error: cannot find symbol
[ERROR] symbol: class IFhirSystemDao
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[133,25] error: cannot find symbol
[ERROR] symbol: class DaoConfig
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[137,6] error: cannot find symbol
[ERROR] symbol: class IFhirSystemDao
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[138,36] error: cannot find symbol
[ERROR] symbol: class IFhirSystemDao
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[140,25] error: cannot find symbol
[ERROR] symbol: class DaoConfig
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[262,6] error: cannot find symbol
[ERROR] symbol: class SubscriptionInterceptorLoader
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[263,19] error: cannot find symbol
[ERROR] symbol: class SubscriptionInterceptorLoader
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[268,49] error: cannot find symbol
[ERROR] symbol: class SubscriptionDebugLogInterceptor
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[272,4] error: cannot find symbol
[ERROR] symbol: class DaoRegistry
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[272,45] error: cannot find symbol
[ERROR] symbol: class DaoRegistry
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[318,6] error: cannot find symbol
[ERROR] symbol: class DaoConfig
[ERROR] location: class JpaRestfulServer
[ERROR] /Users/djiao1/Projects/hapifhir/hapi-fhir-jpaserver-starter/src/main/java/ca/uhn/fhir/jpa/starter/JpaRestfulServer.java:[318,40] error: cannot find symbol
[ERROR] symbol: class DaoConfig
[ERROR] location: class JpaRestfulServer
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
The mysql documentation states to use MySQL5Dialect
but for default mysql it will create tables as MyIsam, not InnoDB. If MyIsam tables, then indexes larger than 1000 bytes cannot be created. Gives mysql error 1071
Proposal to change the documentation to:
hibernate.dialect=org.hibernate.dialect.MySQL5InnoDBDialect
Opening a ticket on this so it doesn't get lost in email threads:
Using the v4.0.0-SNAPSHOT of July 22 and happy-fhir-structures-r4-3.7.0.jar and posting via the UI, I get
Warning!
Error: HTTP 500 : Failed to call access method: org.thymeleaf.exceptions.TemplateProcessingException: Exception evaluating OGNL expression: "not result.resource.interpretation.textElement.empty" (template: "diagnosticreport" - line 68, col 17)
When posting this bundle:
Currently if you change the starter to Postgresql or any other non-embedded DB, the integration tests are failing.
It would nice to default the tests to something embedded, allowing people to use their non-embedded DB, but not failing the tests in their CI environment.
Hello,
your repo works very well with mvn jetty:run, however the docker version is pretty weird.
The start page is http://localhost:8080 instead of http://localhost:8080/hapi-fhir-jpaserver.
I only get 404 (Screen shot):
Following is my docker-compose:
version: "2"
services:
happy:
build: .
image: fhir
container_name: fhir
restart: always
ports:
- 8080:8080
Hi, I am trying to add the AuthorizationInterceptor from http://hapifhir.io/apidocs-server/ca/uhn/fhir/rest/server/interceptor/auth/AuthorizationInterceptor.html
to the project. I tried to register the bean inside ApplicationContext but it doesn't seem to work.
Just trying this project out for the first time and ran into some issues around hapi.properties config. After building and running the project I ran into a couple of errors, all about the URLs. Here was the error:
Warning! Failed to load conformance statement, error was:
ca.uhn.fhir.rest.client.exceptions.FhirClientConnectionException:
Failed to parse response from server when performing GET to
URL http://localhost/fhir/metadata - org.apache.http.conn.HttpHostConnectException:
Connect to localhost:80 [localhost/127.0.0.1, localhost/0:0:0:0:0:0:0:1] failed:
Connection refused (Connection refused)
This was after launching: http://localhost:8080/hapi-fhir-jpaserver/
In order to get this to work, I had to change the following:
# This is the address that the FHIR server will report as its own address.
# If this server will be deployed (for example) to an internet accessible
# server, put the DNS name of that server here.
# server_address=http://localhost/fhir/
server_address=http://localhost:8080/hapi-fhir-jpaserver/fhir/
# This is the context path for the FHIR endpoint. If this is changed, the
# setting above should also be changed.
# server.base=/fhir
server.base=/hapi-fhir-jpaserver/fhir
This was fine, but thought that the above should be the default? If so, I'm happy to submit a pull request.
Maven fails to build the master branch due to this error.
Failure to find ca.uhn.hapi.fhir:hapi-deployable-pom:pom:4.0.0-SNAPSHOT
Do I need to add a repository to my settings.xml or something?
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A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
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Data-Driven Documents codes.
China tencent open source team.