harrisgm Goto Github PK
Name: Guy M. Harris
Type: User
Company: Virginia Commonwealth University
Bio: Ph.D. in Pharmacology and Toxicology. Interests: data science, big data analysis, package development, bioinformatics
Location: Warren, VT
Name: Guy M. Harris
Type: User
Company: Virginia Commonwealth University
Bio: Ph.D. in Pharmacology and Toxicology. Interests: data science, big data analysis, package development, bioinformatics
Location: Warren, VT
Source code and description of GCSscore Package
Contains the necessary functions to generate probe-level annotation packages from Bioconductor platform design (pd) packages.
AnnotationForge generated package containing probe-level information for the HTA-2_0 (Human Transcriptome Array 2.0) microarray. Used by the GCSscore R package for differential gene expression analysis.
Contains annotated probe-level information for the MTA-1_0 (ClariomD mouse) microarray. Used by the GCSscore R package for differential gene expression analysis.
AnnotationForge generated package containing the probe sequence information for MTA-1_0 (ClariomD mouse) array. The package contains all the data within the Affymetrix/Thermo-Fisher "probe_tab" file.
Contains the data files for analyzing MTA / ClariomD (mouse) arrays at the gene-level (transcription cluster ID) with Sscore2 R package
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