Name: Hasindu Gamaarachchi
Type: User
Company: UNSW Sydney and Garvan Institute of Medical Research
Bio: I am currently working on domain-specific computer systems for ultra-efficient real-time genomic data processing
Twitter: Hasindu2008
Location: Australia
artic_c
C/C++ implementation of ARTIC bioinformatics platform for nanopore sequencing of nCoV2019 novel coronavirus
awesome-nanopore
A curated list of awesome nanopore analysis tools.
bioconda-recipes
Conda recipes for the bioconda channel.
biorand
My random bioinformatics tools
buttery-eel
The buttery eel - a slow5 guppy basecaller wrapper
bwa-arm
Burrow-Wheeler Aligner for short-read alignment on arm based devices (see minimap2 for long-read alignment)
debruijn
dedupli-swaram
Spurious alignment Removal, distributed splitting and data transfer for swaram
f5c
Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)
f5p
Lightweight job scheduler and daemon for nanopore data processing on a mini-cluster
flye
De novo assembler for single molecule sequencing reads using repeat graphs
hasindu2008.github.io
hlib
Miscellaneous helpers
htslib-ftidx
C library for high-throughput sequencing data formats - patched for FASTT index
libabea
Adaptive Banded Event Alignment
minimap2-arm
A versatile pairwise aligner for genomic and spliced nucleotide sequences
na12878
Data and analysis for NA12878 genome on nanopore
nanojetfleet
nanopolish-arm
Signal-level algorithms for MinION data
nanopore-cluster
nanopress
Lossless compression for nanopore DNA signal data
nci-scripts
PBS scripts for running nanopore genomics analyses on NCI Gadi
opendba
GPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging
optimised-read-until-api
platycflr
Cache Optimised Platypus Variant Caller
poweranalysis
The A to Z of Building a Testbed for Power Analysis Attacks
rawhash
RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computational resources (e.g., GPUs). Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440)
rawmap
Complements Minimap2 for a fast and efficient Read-Until pipeline
rslow5
R wrapper for slow5lib
scripts-swaram
Support scripts for SWARAM
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
