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advancedsinglecell

Advanced tutorials for single cell data analysis

alphafold_workshop

Predict protein folding structures using ColabFold. Gain a deeper understanding of protein folding prediction with AlphaFold2 and MMseqs2. Run the Jupyter notebook on UCloud, learn to interpret results, predict protein structures of interest. Technical requirements provided. Enhance your knowledge of protein folding and AlphaFold2's principles. Fam

assay-template

This is a cookiecutter template for NGS assay data. This template was made for a workshop at DTU in October 2023

bulk_rnaseq_course

Repository for bulk RNAseq course of the Danish Health Data Science Sandbox project.

cc-data-template

cookiecutter data template

cookiecutter-teaching

Teaching template for the Health Data Science sandbox

cookiecutter-template

This is a cookiecutter template for data analysis dirs by Sandbox.

course-template

A course template for Sandbox courses

docker-cirrocumulus

containerized data visualization tool for scRNAseq including analysis with jupyterlab and scanpy

gdkworkshops

Workshops on GenomeDK cluster at Aarhus University: Introduction, pipeline creation with gwf, and more

gwas_course

GWAS course material

hds-sandbox.github.io

Website for the Health Data Science Sandbox

hpc-lab

jupyterlab-quarto

Quarto JupyterLab Extension which includes personalized callouts

jupyterlab_splashscreen

A splash screen for jupyterlab (mutuated from ENKI lab)

ngs_summer_course_aarhus

Repository for the NGS summer course at Aarhus university

omics-workshop

Introductory HDS Sandbox workshop in genomics, transcriptomics and proteomics

pipeiteasy

Introductory workshop on implementation of pipelines with various languages (snakemake, nf-core, gwf)

popgen_course_aarhus

Population genomics course from AU BiRC - Prof Kasper Munch

populationgenomicscourse

Course in population genomics at BiRC

project-template

This is a cookiecutter template for project folders by Sandbox.

proteomics-sandbox

A resource for biomedical students and researchers. Includes proteomics software tools like FragPipe, MaxQuant, PDV, SearchGUI, ThermoRawFileParser, and PeptideShaker. Offers a user-friendly interface, automated identification and quantification, comprehensive data analysis, and lightweight clone feature for optimized storage.

rdm_ngs_course

Short course on Research Data Management for NGS data

scrnaseq_course

Repository for single cell RNAseq course of the Danish Health Data Science Sandbox project.

sdv_demo

Contains demos of how to use synthetic data vault to create synthetic data

transcriptomics_app_ucloud

Development of the transcriptomics app based on Rstudio for UCloud