Comments (3)
heathsc
commented on August 13, 2024
Thanks for the bug report. The original error was caused by a warning message that was finding its way into the vcf output causing problems downstream. I have fixed this, but the problem remains that for some reason bscall is having problems finding both members of a pair. Is there any chance that you could share a part of your input bam file so that I can see what is happening?
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heathsc
commented on August 13, 2024
You can send the file directly to my email address to avoid sharing it with everyone... ([email protected])
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vrbacky
commented on August 13, 2024
Sure. Thank you very much. More by email.
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Related Issues (20)
- mapped bam files: SM key without value
- Logging error on call HOT 2
- how to set the control sequences?
- PBAT dataset failed in calling step HOT 3
- Can't see colors for ENCODE bigBed on UCSC browser HOT 4
- Scattering gemBS alignment step across a cluster HOT 1
- Conversion rate is N/A in QC HOT 7
- Latest version to Bioconda? HOT 9
- Dealing with overlapping reads HOT 3
- gemBS 3.5.1 issue at map stage of sample data HOT 10
- ValueError: Error while executing the Bisulfite bisulphite-mapping HOT 14
- Alignment Modes HOT 9
- Error when running gemBS map HOT 3
- HowTo enable GPU for read mapping? HOT 7
- mapping merge fails if one of the file_id's is equal to the Barcode
- The .bed file does not match the statistics of the REPORT
- Difference between bin/bs_call and gemBSbinaries/bs_call? HOT 3
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- snp extract "Invalid format" HOT 4
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