Comments (4)
Change made. Thanks.
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Hi,
Thank you for making this change.
At the moment, I see the following error:
Traceback (most recent call last):
File "/home/ucbtmog/.pyenv/versions/3.5.3/bin/gemBS", line 13, in <module>
load_entry_point('gemBS==3.2.9', 'console_scripts', 'gemBS')()
File "/home/ucbtmog/.pyenv/versions/3.5.3/lib/python3.5/site-packages/gemBS/commands.py", line 159, in gemBS_main
instances[args.command].run(args)
File "/home/ucbtmog/.pyenv/versions/3.5.3/lib/python3.5/site-packages/gemBS/production.py", line 367, in run
self.do_mapping(fl)
File "/home/ucbtmog/.pyenv/versions/3.5.3/lib/python3.5/site-packages/gemBS/production.py", line 477, in do_mapping
if m.group(5) in [None, '.gz', '.xz', 'bz2', 'z']:
IndexError: no such group
Perhaps the updating Line 476 below will fix the issue - (as we have fewer groups in the regex) - in my case, group 4 refers to .gz.
Lines 471 to 477 in 0c4e7cb
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