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artsyml

Code for blending people in images or videos with biological images using style transfer.

aurora

WARNING: This code base is no longer supported. It still works, but we recommended using [BrainLes AURORA](https://github.com/BrainLesion/AURORA/) instead, which offers much more flexibility in a convenient PyPI package.

automatedtesting

automatic-cell-counter

A GUI based on napari for counting cells automatically in cell migration experiments

data-centric-platform

A tool for all-kinds segmentation in microscopy imaging which encourages data centric approaches

dl-lecture-tutorials

Crash course on Introduction to AI and its medical applications. Tutorials with focus on intro to DL, overfitting, class imbalance.

echo2pheno

A deep learning application to uncover echocardiographic phenotypes

effidict

emcapsulins_segmentation

segmentation models for EMcapsulins segmentation

fg-clustering

Explainability for Random Forest Models.

lightning-hydra-template

PyTorch Lightning + Hydra. A very user-friendly template for rapid, scalable and reproducible ML experimentation with best practices. ⚡🔥⚡

malis-loss

Tensorflow and Pytorch Version of Malis Loss

napari-organoid-counter

A napari plugin version of the organoid counting repository

oligo-designer-toolsuite

Develop custom oligo design pipelines.

oligo-designer-toolsuite-ai-filters

AI plug-ins for the Oligo Designer Toolsuite package

pysddr

A python package for semi-structured deep distributional regression

pytorch_fnet

A workflow for the generation of cell infection markers from brightfield microscopy images

quicksetup-ai

A flexible template, as a quick setup for deep learning projects in pytorch-lightning

xai-tutorials

Self-explanatory tutorials for different model-agnostic and model-specific XAI methods