hemberg-lab Goto Github PK

d3e

Discrete Distributional Differential Expression

fastsc3

A tool for fast unsupervised clustering of very large single cell RNA-Seq data

georgakopoulos_soares_and_parada_2022

hemberg-lab.github.io

microexonator

Snakemake pipeline for microexon discovery and quantification

mpranator

A webtool to create DNA sequence variants

nrg-paper-figures

rna_seq_snakepipes

sc3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

sc3-paper-figures

Scripts to recreate figures from the SC3 paper

sc3s

Single Cell Consensus Clustering with Speed

scasfind

Identification of cell type-specific alternative splicing events using scASfind

scfind

scfind-paper-figures

Scripts to recreate figures from the scfind paper

scfind-shiny

scfindme

scfindME adaps scfind to alternative splicing analysis

scmap

A tool for unsupervised projection of single cell RNA-seq data

scmap-paper-figures

Scripts to recreate figures from the scmap paper

scmap-shiny

scrna.seq.course

Analysis of single cell RNA-seq data course

scrna.seq.datasets

Collection of public scRNA-Seq datasets used by our group

scrna.seq.funcs

R package containing our own functions used in the scRNA.seq.course

sctransfermap

prediction of cell type from single-cell data

snakepool

tutorials

vasaseq_2022

This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022

yeastdrop-seq

Computational pipeline to reproduce the results in the paper.