Can't run-docker.sh [Ubuntu 16.04, Docker 1.12.5] about hetionet

[dhimmel]

Docker image doesn't seem to be moving run-docker.sh to the right directory

The files in the host directory of this repo are not part of the Docker image. Instead, they must be moved (manually for now) to the home directory of your DigitalOcean droplet. As a start, you may only need run-docker.sh, which is the command to run the Docker in production. If you want to proceed without an SSL certificate, then remove the line:

  --volume=$HOME/ssl:/var/lib/neo4j/certificates \

[zeluspudding]

I'm preparing a custom demo much like you have with hetionet but with finance data. What you've done is a great scaffold for my need so the plan is to reverse engineer your processes and modify to suit.

I found workarounds to all the problems I had:

Problem: No space left on device
Solution: Skip figuring it out and just rebuild the droplet

Problem: Running file run-docker.sh from my droplet's root ($HOME) directory made docker fail/complain about \r on the first line (docker run \). I'm guessing it had something to do with carriage returns
Solution: Instead of trying to fix that I skipped uploading your host files and just ran this in my droplet's shell:

 docker run \
    --detach \
    --publish=7474:7474 \
   --publish=7473:7473 \
   --publish=7687:7687 \
   --volume=$HOME/hetionet-data:/data \
   --volume=$HOME/neo4j-logs:/var/lib/neo4j/logs \
   --env=NEO4J_dbms_memory_pagecache_size=1G \
   --env=NEO4J_dbms_memory_heap_maxSize=512 \
     dhimmel/hetionet

This is different from your run-docker.sh command in that it doesn't care about SSL and maps container ports 7474 to host port 7474. Same for 7473 to 7473 (whereas yours did 80:7474 and 443:7473).

Side Problem: Uploading stuff to droplet
Solution: Skip messing with cert files and just connect to the droplet in filezilla doing the following

 Host: sftp://Your_IP
 User: root (or your username)
 Password: Your password

[dhimmel]

Regarding the No space left on device error, perhaps this could occur if you're not using a volume for storing the Neo4j database (which is enabled with --volume=$HOME/hetionet-data:/data).

What is your immediate goal? Do you just want to have a personal Hetionet instance to query or are you trying something else?

[dhimmel]

I'm preparing a custom demo much like you have with hetionet but with finance data. What you've done is a great scaffold for my need so the plan is to reverse engineer your processes and modify to suit.

Awesome -- can't wait to see your database! I'd recommend making your own Docker image. You can use the Dockerfile as a template -- you'll want to remove the Piwik analytics (or swap in your own analytics).