chr1 data about clair3-trio

[sujunhao]

Hi, the original data can be downloaded from this page. And the training data can be generated from this page.

[shiying-sxu]

Thanks for your answer, I was asking if there is any chr1 data directly used for training

[sujunhao]

Thank you for your follow-up question.

To clarify, we do not directly share the parsed chr1 data for training purposes. However, we do provide a shared training script that can generate the chr1 data from the original bam file. This approach ensures that the data is consistent across all users and allows for greater flexibility in the training process. If you have any further questions or need assistance with the script, please let us know.

[shiying-sxu]

I would like to follow the Comparison of different architectures and shapes for calling variants from trios ,All results were trained on chr1 and tested on chr20 as your paper(fig 5). Therefore, i want to obtain the corresponding data set of chr1 below can you share the training script that can generate the chr1 data from the original bam file?   Thank you ! ------------------ Original ------------------ From: ***@***.***>; Date:  Tue, Mar 21, 2023 03:52 PM To: ***@***.***>; Cc: ***@***.***>; ***@***.***>; Subject:  Re: [HKU-BAL/Clair3-Trio] chr1 data (Issue #2)   Thank you for your follow-up question. To clarify, we do not directly share the parsed chr1 data for training purposes. However, we do provide a shared training script that can generate the chr1 data from the original bam file. This approach ensures that the data is consistent across all users and allows for greater flexibility in the training process. If you have any further questions or need assistance with the script, please let us know. — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: ***@***.***>

[sujunhao]

Hi, the original data can be downloaded from this page. And the script for generating the data is available on this page. Please follow the training script to generate the training data.