Comments (1)
Hi, @naziafrin,
Thanks a lot for your interest. It seems that the error was caused by the wrong file of /tmp/vcf_output/pileup_filtering.vcf
in the vcf post-processing step. Could you please provide your running log of run_clairs_to.log
file and /tmp/vcf_output/pileup_filtering.vcf
file with me (if possible, send them to my email address [email protected]), and I will check the issue for you.
Lei
from clairs-to.
Related Issues (13)
- Error at Haplotag BAM step HOT 5
- RefCall variants HOT 4
- Indexing error at phasing step HOT 3
- Different output HOT 2
- Documentation: training data to create a model HOT 3
- Stalling at Step6 HOT 3
- DP seems downsampling in ClairS-TO HOT 1
- bcftools doesn't like tag name '1kGPoN' HOT 4
- IndexError during STEP1 HOT 4
- Get a large number of variants from ClairS-TO HOT 3
- Value Error in Step 2-3 CALL_VARIANTS HOT 3
- F1 scores and high coverage datasets HOT 2
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