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bioruby-wheat-db

biouby-agp

A Ruby parser of AGP format assembly scaffolding files

blight

De Bruijn graph representation in low memory

brisk

Brisk Reduced Index for Sequence of K-mers

coding_club_example

Repository for coding club to experiment

cris.py

Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concurrently.

durbinlib

Kitchen sink of Java/Groovy classes for UCSC cancer genomics.

expvip

Scripts to prepare the input for the expression browser.

expvip-analysis

R scripts to analyse expression data.

fastk

A fast K-mer counter for high-fidelity shotgun datasets

freebayes

Bayesian haplotype-based polymorphism discovery and genotyping.

gee_fu

An extensible Ruby on Rails web-service application and database for visualising HTGS data

gxbrowser

BRI Gene Browser for integrating Microarray, RNA-seq data, expression data with demographic and clinical information

htslib

C library for high-throughput sequencing data formats

iruby

Official gem repository: Ruby kernel for Jupyter/IPython Notebook

k2282_scripts

Scripts from the K2282 Mapping Paper

kmc

Fast and frugal disk based k-mer counter

kmersgwas

A library for running k-mers based GWAS

kontaminant

kontaminant-1

Tool to look for contaminants, with a kmer database.

metacortex

miso-lims

MISO: An open-source LIMS for NGS sequencing centres

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

msa

Modular BioJS compoment for a multiple sequence alignment

obo_parser

An OBO file parser.

phdthesis

MyPhDThesis.

plant_tools

Tools and documentation for Plants

polycrispr

polymarker_server

webserver to submit jobs to polymarker

pyroclean

PyroClean is a tool to denoise homopolymers from pyrosequence technologies. It is based on a reference sequence and the main aim is to handle homopolymers.