hpcbio Goto Github PK
Name: High Performance Computing in Biology
Type: Organization
Bio: High performance computational biology at the University of Illinois
Location: University of Illinois at Urbana-Champaign
Name: High Performance Computing in Biology
Type: Organization
Bio: High performance computational biology at the University of Illinois
Location: University of Illinois at Urbana-Champaign
**DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version
Allele frequency of codons in specific targeted regions of the mouse genome
A pipeline for variant calling on bacterial genomes created with Nextflow and singularity / docker
wrapper and parser for bam readcount
Bash-glued variant calling workflow optimized for WES on Blue Waters
Low-level (XS) bindings to Samtools
Analysis pipelines from wrappers
A flexible workflow to run variant calling at the scale of hundreds of genomes
Chromatin immunoprecipitation (ChIP-seq) analysis using BWA and MACS2 with QC steps.
This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904
Config files used to define parameters specific to compute environments at different Institutions
Building a Chinese pan-genome of 486 individuals
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
Data Carpentry data management course, combining CSE and HPCBio materials
Workshop covering principles of data management. Gaps in the Git material are intended to be filled with Software Carpentry's git-novice lesson.
An unbiased method for genome-wide CBE off-targets assessment
Differential analysis for ChIP-seq with biological replicates
Workflow for designing KASP markers from resequencing data
Tools and Data related to Enzymatic Methylation Sequencing
EMIRGE reconstructs full length ribosomal genes from short read sequencing data.
An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
Python programs for processing GFF3 files
H3ABioNet 16S package
Haplomerger2 (v20180603)
Hacked version of HaploMerger using .2bit databases
Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publication.
Code for the Hergenrother 2022 mouse antimicrobiall study
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.