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bg_assess

用于对回交后代的背景恢复率进行评估

bsa-seq

The analysis pipeline of BSA-seq. Just for information purposes. Not a fully fledged container

bsr_pipeline

a pipeline of BSR-seq, without parents information

bulkseq

Supporting material for book chapter 'Identification of parent-of-origin-dependent QTLs using bulk-segregant sequencing (Bulk-Seq)'

circrnawrap

a cocktail for circRNA analysis

genefamilyanalysis

Compute gene families for a set of genomes.

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

lncrna-screen

lncRNA-screen

mitobim

MITObim - mitochondrial baiting and iterative mapping

onekeybulkseq

one-key pipeline for QTLseq and Mutmap analysis

pybsaseq

A novel algorithm for BSA-Seq data analysis implemented in Python

qtl-seq

QTL-seq pipeline to identify causative mutations responsible for a phenotype

qtlseq_workflow

from NGS data to QTL-seq result

qtlseqr

QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis

qtlsurge

Software for iterative genotyping design in a QTL-seq experiment

rna-seq_standard

rna_seq_biotrainee

DEG analysis and KEGG/GO enrichment analysis

rnaseq

Standard RNA-seq Workflow

rnaseq-workflow

A repository for setting up a RNAseq workflow

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

rnaseq_workflow

This is a RNAseq workflow.

seqqtl

Toolset for preprocessing sequencing based traits for QTL analysis

table2itol

Generating iToL annotations from Spreadsheet or CSV files

zhang2019nbt

Scripts for stat and plot figures in rice microbiome paper