hpobio-lab Goto Github PK
Name: High Performance Open Bioinformatics Lab
Type: Organization
Location: United States of America
High Performance Open Bioinformatics Lab's Projects
acad18
Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop
alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
cdna_cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
cheatsheets
RStudio Cheat Sheets
composer
Visual and code editor for Common Workflow Language
cookbook
The Data Engineering Cookbook
cookiecutter
A command-line utility that creates projects from cookiecutters (project templates). E.g. Python package projects, jQuery plugin projects.
cpp-cheatsheet
Modern C++ Cheatsheet
curl-size
Use curl to get remote file size.
data-science--cheat-sheet
Cheat Sheets
data_compression_course
A crash course on Data Compression.
decifer
Copy-aware clustering of somatic single nucleotide variants by the descendant cell fraction
deep-learning-for-clustering-in-bioinformatics
Deep Learning-based Clustering Approaches for Bioinformatics
deeplearning-biology
A list of deep learning implementations in biology
docker-alpine-bash
Docker image with Bash and complete utils (busybox replacements) (15MB)
ds4stats
Data science for statisticians workshop
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)
fp16
Conversion to/from half-precision floating point formats
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
git-github-tutorial
A small repo to use for teaching basic git and github
hardware-effects
Demonstration of various hardware effects.
hpcb-lab.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
learning_bam_file
Learning the Sequence Alignment/Map format
miniwdl
A static analysis toolkit for the Workflow Description Language
pliib
A hacky little C++ library that holds some useful functions.
sort-algos-c
Sort Algorithm General Implementations in C Language
starter-workflows
Accelerating new GitHub Actions workflows
tad
A desktop application for viewing and analyzing tabular data
tidy-bio-specs
A collection of specifications for tidy and tidy-translatable genomics formats
tinyfa
A header-only C++ FASTA parser and indexer
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