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bioinfo-demo

Bioinformatics demo resources

bisctree

brie

BRIE: Bayesian Regression for Isoform Estimate in Single Cells

brie-tutorials

Tutorials for using BRIE

briekit

Preprocessing tool kit of BRIE project in splicing analysis

cnv-inference

research project on single-cell dissection of medulloblastoma (brain cancer in children)

codingnotes

Notes for programming and systems management

diceseq

Dynamic Isoform spliCing Estimator via sequencing data

doubletqc

Quality check of doublet detection methods in single-cell RNA-seq data

foundation-data-science

Repo for an HKU course: STAT1005 Foundation of Data Science

glmpca-py

generalized principal component analysis (GLM-PCA) implemented in python

hilearn

A small library of machine learning methods and data visualization plots

huangyh09.github.io

lectures

Oxford Deep NLP 2017 course

limix

Linear mixed model for genomic analyses.

limix-plot

Plotting library for genetics.

miso

MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation

mlpractical

Machine Learning Practical course repository

msclerosissrc

Analysis scripts and notebooks for Multiple Sclerosis project

nnwrapper

Some utilities and wrappers for Neural Network Models

pastri

ptm-x

PTM-X: a prediction tool for Post-Translational Modification cross-talk

pyseqlib

A small python library to process sequencing data.

scmc

Bayesian inference of mutation correlation structure in single-cells.

scqtlib

single-cell quantitative trait (locus) analysis library

singlecell-workshop-2021

slalom

spanki

Splicing analysis toolkit for RNA-SEQ

tensorflow-bayes

Examples of TensorFlow for Bayesian inference

viralscan

STARsolo-ViralScan: Scan viral transcripts from single-cell RNA-seq data with STARsolo