20191213_BUGS_IMPORT_POST_APPLY: Bugs Sample codes need to be stored as alt refs in SEAD about sead_change_control

[roger-mahler]

This script, added as 20191212_DML_UPDATE_SAMPLE_ALT_REFS must be included as a post-action in the Bugs Import Checklist.

begin;
do $$
begin

    begin

        insert into tbl_alt_ref_types (alt_ref_type_id, alt_ref_type, description)
        	values (9, 'Bugs sample code', 'Unique identifier for (physical) samples in the BugsCEP database')
                on conflict do nothing;

        insert into tbl_sample_alt_refs (alt_ref, physical_sample_id, alt_ref_type_id)
        	select bugs_identifier, sead_reference_id, 9
        	from bugs_import.bugs_trace b
        	where bugs_table = 'TSample'
        	  on conflict (sample_alt_ref_id) do update
        	 	set alt_ref = excluded.alt_ref,
        			physical_sample_id = excluded.physical_sample_id;

    exception when sqlstate 'GUARD' then
        raise notice 'ALREADY EXECUTED';
    end;

end $$;
commit;

[roger-mahler]

Solved by 47be102.

Note that this fix (for the time being) must be executed after each Bugs import.

[roger-mahler]

Fixed added to 20191213_BUGS_IMPORT_POST_APPLY

[roger-mahler]

This CR has been archived.

Deprecates CR to enable a clean import in 202312 release.