hybio Goto Github PK

2022-pangenome-graphs-intro

afconverge

Alignment-free phylogenetic method for characterizing regulatory motif adaptations underlying phenotypic convergence

alphafold

Open source code for AlphaFold.

assembly-stats

Assembly statistic visualisation

biocode

Bioinformatics code libraries and scripts

bmt

智能书籍销售管理系统

caastools

CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.

cactus

The Minigraph-Cactus Pangenome Pipeline

cn_learn

CN-Learn

constellator

R package constellatoR to check functional convergence in long lists of Gene Ontology terms and orthogroups

datamapplot

Creating beautiful plots of data maps

genomic_tools

Genomic related tools

genomics_general

General tools for genomic analyses.

graphtyper

Population-scale genotyping using pangenome graphs

hic_tools

A collection of tools for Hi-C data analysis

hosts

镜像：https://coding.net/u/scaffrey/p/hosts/git

hupan

Human pan-genome analysis pipeline

inc-tutorial

mapmixture

An R package and web app for spatial visualisation of admixture on a projected map

neural-admixture

Rapid population clustering with autoencoders

pcoc

Convergent substitution detection tool based on the PCOC model

pggb

the pangenome graph builder

phangorn

Phylogenetic analysis in R

pophelper

An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.

pyranges

Performant Pythonic GenomicRanges

python-100-days

Python - 100天从新手到大师

rerconverge

Analysis of convergence between organismal traits and DNA/protein sequences

seqwish

alignment to variation graph inducer

speedseq

A flexible framework for rapid genome analysis and interpretation

tcbf

A pipeline for identifying conserved topologically associating domain boundaries among multiple species.