iavicenna Goto Github PK

acdb

Some tools for working with acorg experiment databases

advent-of-code-2023

adventofcode2021

my solutions to aoc2021

bayesian-clustering

repo created for posting code to pymc discourse to ask a question

fastq-read-and-write-for-matlab-with-c-mex-

a fast fastq read and write function for MATLAB mostly coded in C and mexed

image-classification

This code written in pytorch uses several convolutional layers to classify images

neural-network-tumor-prediction

Neural network code for predicting whether a tumor is bening or malignant

neutralizationbench

Simulate antibody antigen neutralization ODEs for any number of antibodies and antigens

nuka

ultra-fast nucleotide sequence to amino acid sequence conversion using hashing

omicron-neutralization-paper

antigenic cartography and antibody landscapes related code and figures for the paper Analysis of SARS-CoV-2 Omicron Neutralization Data up to 2022-28-01

pyracmacs

A complete python interface to Racmacs via rpy2

pyreports

PyReports is a python based html report generator that allows typing up reports easily and quickly. Besides many other features, it also allows embedding plotly figures and adding latex formulas.

racmacs

Racmacs R package for performing antigenic cartography https://acorg.github.io/Racmacs

receptor-binding-sites

Depositing information and structures related to location of receptor binding sites in various HA structures

residual-network-pytorch

Implementation of residual networks with basic blocks