ibebio Goto Github PK

alphafold_sm

snakemake wrapper for alphafold

beeline

BEELINE: evaluation of algorithms for gene regulatory network inference

bioconda-recipes

Conda recipes for the bioconda channel.

blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

canu

A single molecule sequence assembler for genomes large and small.

daligner

Find all significant local alignments between reads

demux-recovery

Tool for demultiplexing Illumina FASTQ reads when no index reads are available. Intended usage is a a recovery tool.

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

docker-repet

The REPET package in a container.

emblmygff3

An efficient way to convert gff3 annotation files into EMBL format ready to submit.

freebayes

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

genomeqc

gretl

Statistics and analysis for variation graphs

juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

methylscore

Identification of differentially methylated regions between multiple epigenomes from BS-treated read mappings via methylated region calling

miniforge

A conda-forge distribution.

minitv

Alignment frontend for AliTV

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

onlyoffice-confluence

The plugin which enables the users to edit office documents from Confluence using ONLYOFFICE Document Server, allows multiple users to collaborate in real time and to save back those changes to Confluence

parkour

An open-source Laboratory Information Management System (LIMS) for Next-Generation Sequencing (NGS)

pbbioconda

PacBio Secondary Analysis Tools on Bioconda

picameraapp

A graphical interface for programming the Raspberry Pi PiCamera. Written in Python using Tkinter.

r_programming_alt

R basics course

repet3-install

Install Repet 3, including MySql, without sudo rights

rpi-headless-imaging

A set of tools to set up headless and networkless periodic image acquisition with multiple Raspberry Pis

rstudio-server-conda

Run Rstudio Server in a conda environment

sarek

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake_profiles

snakemake profiles for cluster configuration