Error executing process > 'make_uBAM (sample1 : normal_DNA)' about nextneopi

[riederd]

Hi, thanks for your interest in nextNEOpi

It seems that your slurm scheduler has killed the job because it was running out of memory:

slurmstepd-fn2-0002: error: *** JOB 21392618 ON fn2-0002 CANCELLED AT 2023-04-17T11:26:50 ***
slurmstepd-fn2-0002: error: Detected 1 oom-kill event(s) in StepId=21392618.batch. Some of your processes may have been killed by the cgroup out-of-memory handler.

You might need to reserve more memory, you can do so in conf/process.config

nextNEOpi/conf/process.config

Line 28 in aac260d

beforeScript = "ulimit -n 4096"

add:
memory '64 GB'

[rezakj]

Thank you so much!