Comments (3)
Hi,
so far I didn't see this error. We also ran the tesla data some time ago with a previous version of nextNEOpi. I would need to run them again to see if I can reproduce the issue.
A quick and dirty solution to skip CNVkit would be to add something like this around the CNVkit process on line
Line 4195 in aac260d
if (1 == 2) {
process CNVkit {
.....
}
}
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This worked as a workaround - thank you
from nextneopi.
closing this as we just released v1.4.0 with some software updates
Feel free to reopen in case you still see the error
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