Comments (3)
amoschoomy
commented on June 12, 2024
Update: So I rerun the pipeline but without the resume parameters and everything is working fine again. Maybe some tips on how to deal with this kind of issue? Previously when I reran it but while still including the resume parameters it just throws off an error that were totally unrelated to the issue I had.
Much appreciated for the help before I were to run any actual real data on here! Thanks!
from nextneopi.
riederd
commented on June 12, 2024
Hi, this is not an issue. Unfortunately the immunogenicity_scoring code, which is not developed or maintained by us, is sometimes failing, we are expecting this and so this error is ignored as you can see from:
[f4/f6a60c] NOTE: Missing output file(s) sample1_Class_I_immunogenicity.tsv expected by processimmunogenicity_scoring (sample1) -- Error is ignored
from nextneopi.
riederd
commented on June 12, 2024
I'm closing this issue now. Please feel free to reopen in case something related pops up.
from nextneopi.
Related Issues (20)
- pVACSeq chmod error HOT 4
- Process `installVEPcache (installVEPcache)` terminated with an error exit status (104) HOT 4
- nextNEO resources bundle installation issues HOT 4
- Failed to run, issues related to pvacseq , etc HOT 5
- Error executing process > 'pVACseq (sample1)' HOT 4
- including SNV/indel calling on RNA-seq data HOT 1
- HLA-HD silently fails if bowtie2 is not installed/loaded HOT 1
- Error executing process "installVEPcache" HOT 7
- How could I improve this pipeline?
- mkfifo: cannot create fifo : Operation not supported HOT 2
- `pVACseq ` terminated with an error exit status (1) HOT 2
- Process `get_vhla (test)` terminated with an error exit status (1) HOT 32
- amino acids sometimes doesn't match the reference or variant HOT 2
- Is .cram input format supported? HOT 1
- 'use_custom_hlas' not defined in the main script or the params file
- mixMHC2pred not triggered when custom HLAs are used HOT 1
- example of custom HLAs
- Process `OptiType_RNA (test_sample)` terminated with an error exit status (1) HOT 13
- pVACtools_generate_protein_seq (test_sample)` terminated with an error exit status (1) HOT 5
- pVACseq (test_sample)` terminated with an error exit status (1) HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from nextneopi.