icgc-argo-workflows Goto Github PK
Name: ICGC ARGO Workflows
Type: Organization
Bio: Home of the ICGC ARGO (Accelerate Research in Genomic Oncology) Data Platform Scientific Workflows
Location: Toronto, Ontario
Name: ICGC ARGO Workflows
Type: Organization
Bio: Home of the ICGC ARGO (Accelerate Research in Genomic Oncology) Data Platform Scientific Workflows
Location: Toronto, Ontario
Allele Specific Expression (ASE) analysis package
Alternative Promoter Analysis Packages
Overview of ICGC-ARGO Analysis Pipelines
ARGO specific modules using nf-core framework
Collection of ARGO data quality tool packages
Reference files used by the ICGC-ARGO data analysis pipelines
A collection of somatic variant callers
Centralized documentation for ARGO workflows, including best practices, development process, references, test and benchmarking datasets.
ICGC-ARGO pipeline for analysis of allele specific expression (ASE) based on RNA-seq data
Collection of utility tools for ARGO data processing
A collection of data QC tools / modules used in various ICGC ARGO workflows
A collection of DNA processing tools / modules used in the ICGC ARGO alignment workflow
ICGC ARGO DNA-Seq Processing Workflow
ICGC ARGO Workflow for DNA-Seq Alignment
ICGC-ARGO workflow for DNA-Seq alignment QC
ICGC ARGO GATK Mutect2 Somatic Variant Calling Workflow
GATK Variant Calling for RNA-Seq
Repository for dockerized GATK tools
ICGC ARGO Mutational Signatures Workflow Packages
WIP pipeline for the Structural Variation and Copy Number Working Group of ICGC-ARGO
This repository contains metadata information for PCAWG WGS/RNA-Seq/Validation datasets
Nextflow implementation of https://github.com/icgc-argo/data-processing-utility-tools
RNA editing analysis
RNA-Seq alignment packages
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