Name: Institute for Genome Sciences
Type: Organization
Bio: IGS has helped revolutionize genomic discoveries in medicine, agriculture, environmental science and biodefense.
Location: Baltimore, MD
Blog: http://igs.umaryland.edu
Institute for Genome Sciences's Projects
Bioinformatics script collection
Tools and utilities for running Dockerized metagenomics tools in the Cloud
Disease Ontology
This repository houses a Dockerfile that can be used to build an example and customizable instance of LGTview
A biological sequence annotation and analysis system.
Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.
Feature Aggregate Depth Utility
Genomic Annotation Logic and Execution System
The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
The IGS RNASeq SNP pipeline
Scripts to build the HMP database
IGS Metagenome Assembler
Contains LGTView (http://www.igs.umaryland.edu/labs/lgthgt/analysis/lgt-view/) and all of its necessary installation components.
The IGS lateral gene transfer pipeline
Open Science Data Framework (OSDF)
A docker container to generate the deb package for OSDF
A node.js client for the Open Science Data Framework (OSDF)
A Python OSDF (Open Science Data Framework) client
API for the IGS data portal
Client for retrieving a Portal data manifest file from the cloud
UI for IGS project portals such as the HMP data portal found at https://portal.hmpdacc.org.
Python-based client for downloading data made available through portals powered by the GDC-based portal system..
Repository for new python based report and bdbag generator.
Dockerized version of the IGS transciptomics pipeline and associated utilities
IGS Transcriptomics Pipeline
View 2 blast reports at once
OSDF JSON-Schema files for the Vaginal Microbiome Research Consortium (VMRC)