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Ioannis Kagiampakis's Projects

github icon github

week1 project of Exploratory Data Analysis

onco_miner icon onco_miner

This perl program is a stand alone miner. As an input it is using .csv files from oncomine.org. Oncomine.org is taking a list of genes that you are interested and it is returning how the expression of these genes are changing in a particular cancer. So if you have a list of 200 genes and 20 different types of cancer you will end up with 20 different .csv files with 200 gene each. This program is helping to combine all this data. It can give you for example the best 20 genes with the bigger fold change in all cancers. It returns also a world cloud with the gene names.

renumbered_pdb icon renumbered_pdb

Many times the numbering of the amino acids in a protein structure differs from your numbering. For example for a certain protein you refer to Lys 67 while in the PDB file the same Lys is numbered as Lys68. This program allows you to change the numbering of amino acids in a PDB file.

xls_to_csv icon xls_to_csv

This program is a stand alone perl program that convert .xls files to .csv

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