imageomics Goto Github PK

.github

2023-03-22-imageomics

Website for the Teaching Workshop to be held at the March 2023 Imageomics All-Hands meeting

2024-08-16-osu-online

Software Carpentry Workshop on Version Control with Git and R for Scientific Reproducibility

acuityview

This code provides a simple method for representing a visual scene (i.e. modifying an image) as it may be seen by an animal with less acute vision.

ai-explainability

andromeda

A website that enables users to explore high-dimensional image data

beetlepalooza-2024

BeetlePalooza collaborative hands-on development event to be held at OSU August 12-15

bioclip

This is the repository for the BioCLIP model and the TreeOfLife-10M dataset [CVPR'24 Oral, Best Student Paper].

bioclip-vector-db

Vector database training data retrieval of BioCLIP-embedded nearest neighbors.

butterfly-mimicry

Exploring the influence of acuity on classification accuracy and mimicry in Heliconius butterflies.

cautious-robot

Simple images from CSV downloader that runs and records checksums on downloaded image folder.

char-sim

Pipeline to create model for comparing character state descriptions including ontology similarity

color-calibration

Provides python code for calibrating image colors containing color cards

color-palette-generator

Program that gets a standardized color palette out of an image

colordistance

Distance metrics for image color similarity.

dashboard-prototype

Prototype data dashboard for Imageomics Data

data-workshop-ah-2024

Repository for Mastering Data Management Workshop at the All Hands 2024.

dataverse-access

Dataverse command line tool

distributed-downloader

MPI-based distributed downloading tool for retrieving data from diverse domains.

dna-trait-analysis

Goal: to find associations between dna data and visual traits.

docker-workshop

Lesson on using and creating containers with Docker with an Imageomics emphasis

drawers2data

This project is an AI/ML computer vision pipeline which automatically segments images of whole museum cabinet drawers into annotated images of individual lots and specimens that are ready for phenotypic analysis.

fish-vista

Fish-Vista: A Multi-Purpose Dataset for Understanding \& Identification of Traits from Images

gemma

Genome-wide Efficient Mixed Model Association

image-datapalooza-2023

Repository for the Image Datapalooza 2023 event held at OSU in August 2023.

intr

This is an official implementation for [ICLR'24] INTR: Interpretable Transformer for Fine-grained Image Classification.

kabr-tools

Tools for working with data for annotating animal behavior. These were specifically designed during construction of the KABR dataset.

latloncover

Land usage descriptions for neighborhoods around given lat/long

marmosets-hybrid-classification

Purpose: To train a classification model to distinguish hybrid marmosets from parent species.

ml-morph

Machine-learning-based morphometrics