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anca-gn_transcriptomics

Contains code to analyse ANCA data

bias-transfer-microscopy

A repository containing the code for the paper "Deep learning-based bias transfer for medical immunofluorescent microscopy images"

dcsurv

Discrete Calibrated Survival

deconvolution

Runs deconvolution methods included in the DISSECT manuscript

deepsc

discern

Deep Single Cell Expression ReconstructioN for improved cell clustering and cell subtype and state detection

dissect

Deep semi-supervised complete cell deconvolution https://imsb-uke.github.io/DISSECT/

ecarenet

epigenetic-neural-glioblastoma

exsrrf_analyses

maxomod_pipeline

Reproducible analysis pipeline for the MAXOMOD project: Multiomic ALS signatures highlight sex differences and molecular subclusters and identify the MAPK pathway as therapeutic target

podometric_u_net

Deep learning-based molecular morphometrics for kidney biopsies

rna_augment

scaden

Repository of the Scaden tool for cell type deconvolution of RNA-seq data.

scgan

Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks

tcrs-pmhc

Datasets containing CDR3 Beta sequences and peptide sequences, with a true label indication whether the combination binds or not.