Comments (4)
IndrajeetPatil
commented on June 26, 2024
Hmm, I can't reproduce this behaviour:
library(ggstatsplot)
p <- ggbetweenstats(mtcars, am, mpg)
extract_stats(p)
#> $subtitle_data
#> # A tibble: 1 × 18
#> term group mean.group1 mean.group2 statistic df.error p.value
#> <chr> <chr> <dbl> <dbl> <dbl> <dbl> <dbl>
#> 1 mpg am 17.1 24.4 -3.77 18.3 0.00137
#> method alternative effectsize estimate conf.level conf.low
#> <chr> <chr> <chr> <dbl> <dbl> <dbl>
#> 1 Welch Two Sample t-test two.sided Hedges' g -1.35 0.95 -2.17
#> conf.high conf.method conf.distribution n.obs expression
#> <dbl> <chr> <chr> <int> <list>
#> 1 -0.512 ncp t 32 <language>
#>
#> $caption_data
#> # A tibble: 1 × 16
#> term effectsize estimate conf.level conf.low conf.high pd
#> <chr> <chr> <dbl> <dbl> <dbl> <dbl> <dbl>
#> 1 Difference Bayesian t-test -6.49 0.95 -10.1 -2.75 1.00
#> prior.distribution prior.location prior.scale bf10 method
#> <chr> <dbl> <dbl> <dbl> <chr>
#> 1 cauchy 0 0.707 86.6 Bayesian t-test
#> conf.method log_e_bf10 n.obs expression
#> <chr> <dbl> <int> <list>
#> 1 ETI 4.46 32 <language>
#>
#> $pairwise_comparisons_data
#> NULL
#>
#> $descriptive_data
#> NULL
#>
#> $one_sample_data
#> NULL
#>
#> $tidy_data
#> NULL
#>
#> $glance_data
#> NULLCreated on 2023-09-06 with reprex v2.0.2
Session info
sessioninfo::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#> setting value
#> version R version 4.3.1 (2023-06-16)
#> os macOS Ventura 13.4.1
#> system aarch64, darwin20
#> ui X11
#> language (EN)
#> collate en_US.UTF-8
#> ctype en_US.UTF-8
#> tz Europe/Berlin
#> date 2023-09-06
#> pandoc 3.1.6.1 @ /usr/local/bin/ (via rmarkdown)
#>
#> ─ Packages ───────────────────────────────────────────────────────────────────
#> package * version date (UTC) lib source
#> BayesFactor 0.9.12-4.4 2022-07-05 [1] CRAN (R 4.3.0)
#> bayestestR 0.13.1.2 2023-07-03 [1] https://easystats.r-universe.dev (R 4.3.1)
#> cli 3.6.1 2023-03-23 [1] CRAN (R 4.3.0)
#> coda 0.19-4 2020-09-30 [1] CRAN (R 4.3.0)
#> codetools 0.2-19 2023-02-01 [1] CRAN (R 4.3.1)
#> colorspace 2.1-0 2023-01-23 [1] CRAN (R 4.3.0)
#> correlation 0.8.5 2023-08-21 [1] https://easystats.r-universe.dev (R 4.3.1)
#> datawizard 0.8.0.8 2023-08-30 [1] https://easystats.r-universe.dev (R 4.3.1)
#> digest 0.6.33 2023-07-07 [1] CRAN (R 4.3.0)
#> dplyr 1.1.3 2023-09-03 [1] CRAN (R 4.3.0)
#> effectsize 0.8.5 2023-08-09 [1] CRAN (R 4.3.0)
#> emmeans 1.8.8 2023-08-17 [1] CRAN (R 4.3.1)
#> estimability 1.4.1 2022-08-05 [1] CRAN (R 4.3.0)
#> evaluate 0.21 2023-05-05 [1] CRAN (R 4.3.0)
#> fansi 1.0.4 2023-01-22 [1] CRAN (R 4.3.0)
#> fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.3.0)
#> fs 1.6.3 2023-07-20 [1] CRAN (R 4.3.0)
#> generics 0.1.3 2022-07-05 [1] CRAN (R 4.3.0)
#> ggplot2 3.4.3 2023-08-14 [1] CRAN (R 4.3.1)
#> ggrepel 0.9.3 2023-02-03 [1] CRAN (R 4.3.0)
#> ggstatsplot * 0.12.0 2023-06-02 [1] local
#> glue 1.6.2 2022-02-24 [1] CRAN (R 4.3.0)
#> gtable 0.3.4 2023-08-21 [1] CRAN (R 4.3.1)
#> htmltools 0.5.6 2023-08-10 [1] CRAN (R 4.3.1)
#> insight 0.19.3.3 2023-08-30 [1] https://easystats.r-universe.dev (R 4.3.1)
#> knitr 1.43 2023-05-25 [1] CRAN (R 4.3.0)
#> lattice 0.21-8 2023-04-05 [1] CRAN (R 4.3.1)
#> lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.3.0)
#> magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.3.0)
#> MASS 7.3-60 2023-05-04 [1] CRAN (R 4.3.1)
#> Matrix 1.6-1 2023-08-14 [1] CRAN (R 4.3.0)
#> MatrixModels 0.5-2 2023-07-10 [1] CRAN (R 4.3.0)
#> multcomp 1.4-25 2023-06-20 [1] CRAN (R 4.3.0)
#> munsell 0.5.0 2018-06-12 [1] CRAN (R 4.3.0)
#> mvtnorm 1.2-3 2023-08-25 [1] CRAN (R 4.3.0)
#> paletteer 1.5.0 2022-10-19 [1] CRAN (R 4.3.0)
#> parameters 0.21.1.2 2023-06-27 [1] https://easystats.r-universe.dev (R 4.3.1)
#> patchwork 1.1.3 2023-08-14 [1] CRAN (R 4.3.1)
#> pbapply 1.7-2 2023-06-27 [1] CRAN (R 4.3.0)
#> pillar 1.9.0 2023-03-22 [1] CRAN (R 4.3.0)
#> pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.3.0)
#> purrr 1.0.2 2023-08-10 [1] CRAN (R 4.3.0)
#> R.cache 0.16.0 2022-07-21 [1] CRAN (R 4.3.0)
#> R.methodsS3 1.8.2 2022-06-13 [1] CRAN (R 4.3.0)
#> R.oo 1.25.0 2022-06-12 [1] CRAN (R 4.3.0)
#> R.utils 2.12.2 2022-11-11 [1] CRAN (R 4.3.0)
#> R6 2.5.1 2021-08-19 [1] CRAN (R 4.3.0)
#> Rcpp 1.0.11 2023-07-06 [1] CRAN (R 4.3.0)
#> rematch2 2.1.2 2020-05-01 [1] CRAN (R 4.3.0)
#> reprex 2.0.2 2022-08-17 [1] CRAN (R 4.3.0)
#> rlang 1.1.1 2023-04-28 [1] CRAN (R 4.3.0)
#> rmarkdown 2.24 2023-08-14 [1] CRAN (R 4.3.1)
#> rstudioapi 0.15.0 2023-07-07 [1] CRAN (R 4.3.0)
#> sandwich 3.0-2 2022-06-15 [1] CRAN (R 4.3.0)
#> scales 1.2.1 2022-08-20 [1] CRAN (R 4.3.0)
#> sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.3.0)
#> statsExpressions 1.5.1 2023-05-23 [1] local
#> stringi 1.7.12 2023-01-11 [1] CRAN (R 4.3.0)
#> stringr 1.5.0 2022-12-02 [1] CRAN (R 4.3.0)
#> styler 1.10.2 2023-08-29 [1] CRAN (R 4.3.1)
#> survival 3.5-7 2023-08-14 [1] CRAN (R 4.3.0)
#> TH.data 1.1-2 2023-04-17 [1] CRAN (R 4.3.0)
#> tibble 3.2.1 2023-03-20 [1] CRAN (R 4.3.0)
#> tidyr 1.3.0 2023-01-24 [1] CRAN (R 4.3.0)
#> tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.3.0)
#> utf8 1.2.3 2023-01-31 [1] CRAN (R 4.3.0)
#> vctrs 0.6.3 2023-06-14 [1] CRAN (R 4.3.0)
#> withr 2.5.0 2022-03-03 [1] CRAN (R 4.3.0)
#> xfun 0.40 2023-08-09 [1] CRAN (R 4.3.0)
#> xtable 1.8-4 2019-04-21 [1] CRAN (R 4.3.0)
#> yaml 2.3.7 2023-01-23 [1] CRAN (R 4.3.0)
#> zeallot 0.1.0 2018-01-28 [1] CRAN (R 4.3.0)
#> zoo 1.8-12 2023-04-13 [1] CRAN (R 4.3.0)
#>
#> [1] /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library
#>
#> ──────────────────────────────────────────────────────────────────────────────Can you check the session information here and see if you are missing any of the dependencies?
from ggstatsplot.
lxsteiner
commented on June 26, 2024
Thank you for the reply. After library(ggstatsplot) not all packages get loaded for some reason:
sessioninfo::session_info()
─ Session info ────────────────────────────────────────────────────────────────────────────────────────────────
setting value
version R version 4.2.2 (2022-10-31 ucrt)
os Windows 10 x64 (build 19045)
system x86_64, mingw32
ui RStudio
language en
collate German_Germany.utf8
ctype German_Germany.utf8
tz Europe/Prague
date 2023-09-07
rstudio 2022.12.0+353 Elsbeth Geranium (desktop)
pandoc NA
─ Packages ────────────────────────────────────────────────────────────────────────────────────────────────────
! package * version date (UTC) lib source
P bayestestR 0.13.1 2023-04-07 [?] RSPM (R 4.2.0)
P cli 3.6.1 2023-03-23 [?] RSPM (R 4.2.0)
P colorspace 2.1-0 2023-01-23 [?] RSPM (R 4.2.0)
P correlation 0.8.4 2023-04-06 [?] RSPM (R 4.2.0)
P datawizard 0.8.0 2023-06-16 [?] RSPM (R 4.2.0)
P dplyr 1.1.3 2023-09-03 [?] RSPM (R 4.2.0)
P fansi 1.0.4 2023-01-22 [?] RSPM (R 4.2.0)
P generics 0.1.3 2022-07-05 [?] RSPM (R 4.2.0)
P ggplot2 3.4.3 2023-08-14 [?] RSPM (R 4.2.0)
P ggstatsplot * 0.12.0 2023-08-07 [?] RSPM (R 4.2.0)
P glue 1.6.2 2022-02-24 [?] RSPM (R 4.2.0)
P gtable 0.3.4 2023-08-21 [?] RSPM (R 4.2.0)
P insight 0.19.3 2023-06-29 [?] RSPM (R 4.2.0)
P lifecycle 1.0.3 2022-10-07 [?] RSPM (R 4.2.0)
P magrittr 2.0.3 2022-03-30 [?] RSPM (R 4.2.0)
P munsell 0.5.0 2018-06-12 [?] RSPM (R 4.2.0)
P paletteer 1.5.0 2022-10-19 [?] RSPM (R 4.2.0)
P parameters 0.21.1 2023-05-26 [?] RSPM (R 4.2.0)
P patchwork 1.1.3 2023-08-14 [?] RSPM (R 4.2.0)
P pillar 1.9.0 2023-03-22 [?] RSPM (R 4.2.0)
P pkgconfig 2.0.3 2019-09-22 [?] RSPM (R 4.2.0)
P purrr 1.0.2 2023-08-10 [?] RSPM (R 4.2.0)
P R6 2.5.1 2021-08-19 [?] RSPM (R 4.2.0)
P rematch2 2.1.2 2020-05-01 [?] RSPM (R 4.2.0)
renv 1.0.2 2023-08-15 [1] CRAN (R 4.2.3)
P rlang 1.1.1 2023-04-28 [?] RSPM (R 4.2.0)
P rstudioapi 0.15.0 2023-07-07 [?] RSPM (R 4.2.0)
P scales 1.2.1 2022-08-20 [?] RSPM (R 4.2.0)
P sessioninfo * 1.2.2 2021-12-06 [?] RSPM (R 4.2.0)
P statsExpressions 1.5.1 2023-05-23 [?] RSPM (R 4.2.0)
P tibble 3.2.1 2023-03-20 [?] RSPM (R 4.2.0)
P tidyselect 1.2.0 2022-10-10 [?] RSPM (R 4.2.0)
P utf8 1.2.3 2023-01-31 [?] RSPM (R 4.2.0)
P vctrs 0.6.3 2023-06-14 [?] RSPM (R 4.2.0)
P zeallot 0.1.0 2018-01-28 [?] RSPM (R 4.2.0)
[1] C:/Users//Documents/misc/ggstatsplot_plotting/renv/library/R-4.2/x86_64-w64-mingw32
[2] C:/Users//AppData/Local/R/cache/R/renv/sandbox/R-4.2/x86_64-w64-mingw32/611f223d
P ── Loaded and on-disk path mismatch.But when I inspect what was installed:
> installed.packages()
abind
afex
backports
base64enc
BayesFactor
bayestestR
brio
broom
bslib
BWStest
cachem
callr
car
carData
cli
clipr
coda
colorspace
contfrac
correlation
corrplot
cowplot
cpp11
crayon
datawizard
desc
deSolve
diffobj
digest
dplyr
effectsize
ellipsis
elliptic
evaluate
fansi
farver
fastmap
fontawesome
fs
generics
ggcorrplot
ggplot2
ggpubr
ggrepel
ggsci
ggside
ggsignif
ggstatsplot
glue
gmp
gridExtra
gtable
highr
htmltools
hypergeo
insight
isoband
jquerylib
jsonlite
knitr
kSamples
labeling
lifecycle
lme4
lmerTest
magrittr
MatrixModels
mc2d
memoise
mime
minqa
multcompView
munsell
mvtnorm
nloptr
numDeriv
paletteer
parameters
patchwork
pbapply
pbkrtest
performance
pillar
pkgconfig
pkgload
plyr
PMCMRplus
polynom
praise
prismatic
processx
ps
purrr
quantreg
R6
rappdirs
RColorBrewer
Rcpp
RcppEigen
rematch2
renv
reprex
reshape
reshape2
rlang
rmarkdown
Rmpfr
rprojroot
rstatix
rstudioapi
sass
scales
sessioninfo
SparseM
statsExpressions
stringi
stringr
SuppDists
testthat
tibble
tidyr
tidyselect
tinytex
utf8
vctrs
viridisLite
waldo
withr
WRS2
xfun
yaml
zeallot
They seem to be installed. Not sure what's going on. Any idea what I might be doing wrong? Thank you.
from ggstatsplot.
IndrajeetPatil
commented on June 26, 2024
@lxsteiner Are you still seeing the same issue? Even after updating to the latest version of ggstatsplot (0.12.1)?
from ggstatsplot.
lxsteiner
commented on June 26, 2024
@IndrajeetPatil I couldn't get it to work, even after installing the newest version of all required packages. In the meantime, I did a clean new install of the most recent R version and installed everything again. The issue did not happen afterwards. Maybe it was some package mismatch with that particular version of R (4.2.2)... 🤷♂️ who knows. Thanks nevertheless.
from ggstatsplot.
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