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approaching-any-ml-problem

Notebooks from Approaching (Almost) Any Machine Learning Problem - Abhishek Thakur

awesome_bigdata_ai_drugdiscovery

A collection of resources useful for leveraging big data and AI for drug discovery. It mainly serves as an orientation for new lab folks. It may be biased towards my lab interest.

bioinformatics-workflows

minimal example implementations for bioinformatics workflow managers

bioinformaticsalgorithm

Code for UCSD Bioinformatics Coursera

computational-drug-discovery

Contains various methods and examples for Computational Drug Discovery

cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

deeplearning-for-lifescience

Contains various implementations of different Deep Learning Algorithms for Life Science problems

epigenomics

Different possible analysis for Epigenomics data

fyp-ml-for-genomics

This repo contains relevant files for my final year project in NUS (2018).

indrikwijaya

Config files for my GitHub profile.

indrikwijaya.github.io

Minimal portfolio for DS projects

intro-to-ml-assignments-mit

This repo contains google colab notebooks for the homework exercises from Leslie Kabling's 'Intro to Machine Learning' course.

machine-learning-book

Code Repository for Machine Learning with PyTorch and Scikit-Learn

mcb112-biological-data-analysis

Contains lecture notes, sectional materials and exercises from Prof Sean Eddy's course

metabolomics

Contains examples of workflow for Metabolomics analysis

microbiome

Different notebooks containing analysis of Microbiome data

ml-coursera-python-assignments

Andrew Ng's Machine Learning Coursera Assignments

modern-statistics-for-modern-biology

Contains solutions for exercises from the book Modern Statistics for Modern Biology (Susan Holmes & Wolfgang Huber)

multi-omics

Contains different tools used for Multi-omics integration and analysis

nf-mgx-short

Nextflow Pipeline to Run Taxonomic Classifier, Functional Annotation and Resistome Analysis for Short Shotgun Metagenomics Reads

notebook-examples

This repo contains different notebooks from the book 'Hands-On Machine Learning with Scikit-Learn & TensorFlow'

old-rnaseq

Scripts to run end-to-end RNAseq pipeline (from fastq to RPKM files)

p4l_go

Contains materials for 'Programming for Lovers (P4L)' using GO by Phillip Compeau

proteomics

Contains an example of workflow for Proteomics analysis

rna-seq

Contains example steps to run RNAseq analysis

scrna-seq

Contains various notebooks & scripts involved in scRNA-seq analysis

tidytuesday

utility

Computational biology utility scripts