Comments (3)
Dear boosgaochuan,
Thanks for using Circle-Map. This error is not part of the Circle-Map software. It is an error of bwa mem. Nevertheless, I think I can help you. The error occurs because you are using an old version of bwa. The last version of bwa (version: 0.7.17-r1188) includes the -q option. Hence, if you update bwa to the last version that step should work.
You can see the bwa version in your system by typing bwa
in your terminal.
Let me me know if it works
Best,
Iñigo
from circle-map.
from circle-map.
Glad to hear,
Have a happy circle hunt!
Best,
Iñigo
from circle-map.
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from circle-map.