Question regarding the "Circle score" about circle-map

[iprada]

The whole idea is to arrive to an additive scoring scheme that takes into account the amount of reads (more better), the length of the read (ore better) and the mapping probability (higher better)

[ko0000]

The whole idea is to arrive to an additive scoring scheme that takes into account the amount of reads (more better), the length of the read (ore better) and the mapping probability (higher better)

Thank you! So you simply add the numbers together? Have you set a specific weight to any of the parameters in your equation? or given every parameter an equal weight when calculating "circle score"?

(e.g., If the "length of the reads" is more important than the other parameter when indicating eccDNA, you give the "length of the reads" more weight than the other parameters when adding the score together to get the circle score)

Best,

Ko

[iprada]

Sorry for the late reply. In a very hacky manner. So that it was helpful for some collaborators. I have therefore not explore anything about it.

best,

Inigo