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Inigo Iribarren Aguirre's Projects

aqme icon aqme

Automated Quantum Mechanical Environments (AQME) offers transparent and reproducible workflows available for Jupyter Notebooks and command lines, including: 1) RDKit- and CREST-based conformer generation, 2) QM input file creation, 3) post-processing of QM output files, 4) generation of xTB, DFT and RDKit descriptors. https://aqme.readthedocs.io

rmsd icon rmsd

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

soap_simulation icon soap_simulation

Small simulations that were created to visualise how viruses are dissolved by soap

stk icon stk

A Python library which allows construction and manipulation of complex molecules, as well as automatic molecular design and the creation of molecular databases.

v icon v

A simple X11 molecular viewer

xyz2svg icon xyz2svg

A lightweight script to make vector images of molecules

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