ArrayExpress files that didn't work with MAGE2ISA beta about magetoisaconverter

[proccaserra]

Hello Dorothy,

I run the conversion for all the experiments you mentioned and got
slightly different results, but did get errors.
I found a couple of bugs I will now fix.
Thanks for reporting the issues.
However, the service will only be updated when Eamonn is back from his
break.

Best wishes

Philippe

On 18/07/2011 19:05, dsreilly wrote:

Hello ISAteam

1. I used the MAGE2ISA converter (online version, http://isatab.sourceforge.net/magetoisa/ ) and got back error messages when I tried to load the output files into Isacreator v 1.3.2

I just double clicked on the archive to unarchive it prior to attempting to load into ISAcreator (is there a better way to unarchive? I'm on a MacBookPro OSX 10.6.7).

Here are the ArrayExpress studies and error messages:

For E-GEOD-9452 and E-GEOD-13367:
error in it's definitions STUDY DESIGN DESCRIPTORS has an error in it's definition
Unrecognised assay in unknown_experiment_design_type

For E-GEOD-10714, E-GEOD-16879, E-GEOD-4183
INVALID ISATAB FILEStudy Submission Date has an error in it's definition STUDY DESIGN DESCRIPTORS has an error in it's definition

Unrecognised assay in transcription profiling by array

1. Is there a way to attach screenshots to these issue reports?

Thank you,
Dorothy Reilly
NIBR
Cambridge MA USA
617-871-3005
[email protected]