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adam

A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

additionals

Redmine plugin for customizing, providing wiki macros and act as library for other plugins.

appsmith

Low code project to build admin panels, internal tools, and dashboards. Integrates with 15+ databases and any API.

arvados

an open source platform for managing and analyzing biomedical big data

arvados-dev

Development tools for people who hack on arvados core

blog

cctools

The Cooperative Computing Tools (cctools) enable large scale distributed computations to harness hundreds to thousands of machines from clusters, clouds, and grids.

crossbow

Variant calling from sequence reads using cloud computing

docxtemplater

Generate docx pptx and xlsx (Microsoft Word, Powerpoint, Excel documents) from templates, from Node.js, the Browser and the command line / Demo: https://www.docxtemplater.com/demo

get-evidence

gms

The Genome Modeling System installer (BETA).

kegg-crawler

A parallel web crawler for the retrieval of KEGG genomics data.

lightning

lightning

longupload

madeline

Madeline Pedigree Drawing Engine Web Service (https://madeline.med.umich.edu/madeline/)

pycon2015_talk

The slides, code examples and resources for the PyCon 2015 Ireland talk on building data pipelines

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

snpeff

snpeff-1

snpEff with HGVS annotations for nucleotide changes ***NOT THE OFFICIAL snpEff REPOSITORY***

tapestry

ts

Torrent Suite

warehouse-apps

wdl

Workflow Description Language

weiciyuan

Sina Weibo Android Client