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100-days-of-ml-code

100 Days of ML Coding

applied-computational-genomics

Applied Computational Genomics Course at UU

chemoinformatics_resources

A Highly Opinionated List of Open Source Cheminformatics Resources

chemoinformatics_workshop

coding-interview-university

A complete computer science study plan to become a software engineer.

comp-genomics-class

Code and examples for JHU Computational Genomics class

computationalgenomicsmanual

Robs manual for the computational genomics and bioinformatics class.

eva-accession

EVA non-human variant accessioning service

eva-common-pyutils

EBI EVA - Common Python Utilities

eva-submission

Components that connect and automate main tasks in the EVA submission workflow

eva-tasks

Code used to to perform tasks or one of analysis.

eva-vcf-merge

Tool for merging large sets of VCF files

fastqc-with-apache-spark

figureonelab

A running start for your computational biology portfolio.

machine_learning_for_qsar

Simple ML model for performing QSAR

markdown-cheatsheet

Markdown Cheatsheet for Github Readme.md

mdanalysis

MDAnalysis is a Python library to analyze molecular dynamics trajectories.

openchem

OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research

samplefile_creation

single_cell_rna_seq_workshop

repository for the single cell RNA-Seq workshop

skill-assessments

Training requirements for joining projects

variant-remapping

The pipeline for remapping VCF variants between two arbitrary FASTA assemblies.

vcf_comp_with_gold_standard

This tool would use the hap.py comparison tool for comparing the generated VCF files with the gold standard file

workshop-epigenomics-rtds

workshop website on readthedocs