Ivan Jayapurna's Projects
A 2D particle simulator to be connected to OpenWSN or similar network simulator to test micro-robot control functions and algorithms
Adversarially Attacking AttentiveChrome with PGD / FGSM (modifying processed input of binned histone modification data)
UC Berkeley AIChE Student Chapter Website
A python script using OpenCV, PIL, and ufp packages to convert Raspberry Pi Camera feed into SWARM Lab Research Camera quality feed
Chec Consulting Website
Simulates polymer chain growth based on the Mayo Lewis equation and the Monte Carlo method
Basic transfer learning image classifier, using pre-trained ImageNet model to classify yearbook faces into decades.
Very simple Design of Experiments (DOE) python setup for flexible application to any project. Currently only LHS algorithm implemented. Links attached to add more.
Python script that plots batches of GPC data with customizable figure quality and with baseline correction implemented. Written for use by the Ting Xu Lab, UC Berkeley.
Colorimetric analysis of HRP assays from video files
Input an image and apply KMeans clustering to count the percentage of each colour in the image. This was built for protein surface composition analysis.
Personal Website
Reimplementation of the UniRep protein featurization model.
A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented in Biswas et al.
Plotter raw data files from the nanodrop
Synthesizing and manipulating 2048x1024 images with conditional GANs
Mutates protein sequences based on standard mutation code
Sequence Space Calculation for RHP
Xu Group's Compositional Drift App but high throughput - for bulk simulation and generation of simulated polymer sequence datasets.
RXNMapper: Unsupervised attention-guided atom-mapping
Bash script and launch files to spawn multiple hector quadrotors in an emtpy Gazebo world, controlled by ROS nodes.
UniRep model, usage, and examples.
Clean messy UV-Vis input and load data into Pandas DataFrames for Aggregation and further analysis (TBD)
Proposed new Xu Group Website Layout