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deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

deeplearning

Deep Learning (Python, C/C++, Java, Scala, Go)

glinter

Graph Learning of INTER-protein contacts

gremlin_cpp

GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!

networks

pyconsfold

raptorx-3dmodeling

Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will update this as soon as possible.

raptorx-contact

Deep residual neural network for protein contact/distance prediction developed by Xu group

resnetqa

ResNetQA: Improved protein model quality assessment by integrating sequential and pairwise features using deep learning