Jacob Malcom's Projects
Checklists/cheatsheets for preparing 2b-RAD libraries (Wang et al. 2012, Nature Methods 9(8):808-810)
A small script to convert an Access database to an SQLite database.
1-function package to include the shinydashboard AdminLTE.css with Rmarkdown docs
CSS and related for our analysis products
Examples showing how to use the App Engine Search API.
A repo of J. Malcom's notes from the Association of Southeastern Biologists meeting in Concord, NC, Mar 31 - 03 Apr 2016.
A basic app for exploring candidate/proposed species data.
A small shiny microapp for the sign-on opposing the US-Mexico border wall (https://defenders-cci.org/sign-on/border-wall/)
The index page for cci-dev.org and associated CSS.
Theme for CCI's new landing site (WordPress child theme)
Code for "Habitat changes in designated critical habitat, 2001-2011"
A small analysis to evaluate the extent of exclusions of areas from critical habitat designations
A bookdown + Google Docs version of dynamic recovery plans
Repository for paper "Extensive Cross-Environment Fitness Variation Lies Along A Single Axis Of Genetic Variation In The Model Alga, Chlamydomonas reinhardtii", Malcom et al.
Code for examining data on compliance with the ESA.
A shiny microapp for the conservation funding scientist sign-on
A nicer Admin-side (backend) theme for dynamic recovery plans (in progress)
Discourse API R client
An R client for accessing a Discourse (http://www.discourse.org) site API
A repo for version control of DECRIPTION files for DOW ESC datasets
Landing page for the DSL sand mines project
Index page for the dynamic recovery project
An R project for scraping endangered species documents and data from ECOS.
An R package for scraping the U.S. Fish and Wildlife Service's ECOS site.
A simple R package to interface with taskrabbit/elasticsearch-dump
An R flexdashboard for an overview of ESA five-year review timeliness
Species listed under the U.S. Endangered Species Act.
R data package of county occurrence data for U.S. Endangered Species Act-listed species.
Elasticsearch and an app for ESA documents.