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I'm a Research Engineer at DeepMind. I completed my undergrad in Computer Science, Math, and Stats at the University of Toronto, where I was fortunate to work with Roger Grosse and David Duvenaud at the Vector Institute. My goal is to use machine learning to understand biology. I'm interested in energy-based models, latent variable models, neural ODEs, and genomics.

Jacob Kelly's Projects

adversarial-mnist icon adversarial-mnist

Generating adversarial examples via iterated fast gradient sign method (Goodfellow et al.) to fool a convolutional neural network on handwritten digits.

algorithmsdotjs icon algorithmsdotjs

An opensource npm package of common data structures and algorithms.

awesome-neural-ode icon awesome-neural-ode

A collection of resources regarding the interplay between differential equations, dynamical systems, deep learning, control and optimization.

boxblur icon boxblur

Blurs a png using the BoxBlur algorithm

cartpole icon cartpole

Implementation of hill-climbing and policy gradient RL algorithms on OpenAI Gym Cartpole environment as part of OpenAI Requests for Research.

clinical-ad icon clinical-ad

Abbreviation disambiguation (AD) in clinical notes using concept embedding model (Marta Skreta) and convolutional neural network baseline (Jacob Kelly).

cs231n icon cs231n

Assignments from CS231n: Conv Nets for Visual Recognition

deepsort icon deepsort

Learning to sort numbers using a LSTM with a modified attention mechanism (Pointer Networks by Vinyals et al.).

distortionsim icon distortionsim

testing one-sided matching algorithms which aim to minimize distortion

easy-neural-ode icon easy-neural-ode

Code for the paper "Learning Differential Equations that are Easy to Solve"

gibbs-jem icon gibbs-jem

Code for the paper "Directly Training Joint Energy-Based Models for Conditional Synthesis and Calibrated Prediction of Multi-Attribute Data"

jax icon jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

proteinnet icon proteinnet

Standardized data set for machine learning of protein structure

robby-the-robot icon robby-the-robot

genetic algorithm for finding optimal cleaning strategy of a virtual cleaning robot

sequencing icon sequencing

Fast alignment of genomic sequences using Boyer-Moore with linear time construction of indexes using Z algorithm.

slurm icon slurm

Scripts for launching sweeps on a SLURM cluster.

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