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100-examples-of-python

Some examples of Python on basic applications

5years

amplicon

High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis

amplicon-1

Statistics and visualization for amplicon data

biobakery

bioBakery tools for meta'omic profiling

bioinformatics123

biopython

Official git repository for Biopython (converted from CVS)

biopython-cn

Biopython Tutorial Chinese Translation

biopython-cn-1

Biopython 中文翻译

biopython-notebook

Notebooks to introduce biopython

biopython_workshop

A basic introduction to Biopython, intended for a classroom based workshop

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

co-occurrence_network_analysis

R and python scripts for correlation-based network analysis

concordia_workshop_biopython

Pratical to learn basic Biopython usage

db

Scripts and databases for amplicon and metagenome

dev-sidecar

开发者边车，github打不开，github加速，git clone加速，git release下载加速，stackoverflow加速

diting

DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data

dna-seq-analysis

DNA sequencing analysis notes from Ming Tang

docker

easyamplicon

Easy Amplicon data analysis pipeline

easymetagenome

Easy Metagenome Pipeline 2019 (1.0)

enrichm

Toolbox for comparative genomics of MAGs

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

fegenie

HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes

gatk

Official code repository for GATK versions 4 and up

geo

ggclusternet

Microbial ecological network visualization clustering

ggcor-1

ggcor备用源，版权归houyunhuang所有，本源仅供应急使用

ggplot2

An implementation of the Grammar of Graphics in R

google-access-helper

谷歌访问助手破解版、谷歌翻墙、谷歌梯子、谷歌梯子扩展工具、谷歌商店访问、Chrome翻墙