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Jonathan A Rees's Projects

bayeslite icon bayeslite

BayesDB on SQLite. A Bayesian database table for querying the probable implications of data as easily as SQL databases query the data itself.

cgpm icon cgpm

Library of composable generative population models which serve as the modeling and inference backend of BayesDB.

eol_website icon eol_website

This repository contains rails code for the new version of EOL (TRAMEA).

gnex icon gnex

Port of NEX emacs extensions to GNU emacs

harvester icon harvester

Service for harvesting resources from partners into a normalized database (for later publication)

jade icon jade

A fork of the PEBLS Jade collection of Java objects for phylogenetics and evolutionary biology

listtools icon listtools

Tools for manipulating lists of things, and taxonomic checklists in particular.

mammals-bayesdb icon mammals-bayesdb

Ipython notebook for doing crosscat analysis of EOL mammals 'trait' data

mumble-net-jar icon mumble-net-jar

Report problems with JAR's web site http://mumble.net/~jar/ here

nexml icon nexml

NeXML is an exchange standard for representing phyloinformatic data.

nut icon nut

Soil nutrient uptake simulation

paris-keith icon paris-keith

Some data and code from Keith Robison and Millennium - thanks

plotter icon plotter

Utilities for updating an EOL graphdb

process icon process

TDWG processes specify how people organize and collaborate to create, ratify, and maintain standards for biodiversity information.

psyche icon psyche

Web site for the Ent Club's archive of Psyche: A Journal of Entomology

testbed icon testbed

JAR's place to play around with neo4j, ror, etc

tnc-1 icon tnc-1

Taxonomic Names and Concepts Interest Group

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