IOError: Not a gzipped file about alignqc

[Yuyao1025]

Have you solved this problem yet? I met this problem, too. Could you please share your experience for me?Thanks so much!

[SziKayLeung]

No I haven't, but do let me know too if you have solved the problem - Thanks!

[Yuyao1025]

I had solved it after i compressed .gft file to .gz format. I think there is a bug exist in "analyze.py", line 46 and line 47. I think you can also solve these problem through fixing this bug.

[abayega]

Hi Szi Kay,

I think AlignQC works with gpd file not gtf. This could be a problem too.

[abayega]

Sorry, my bad, just realised that gtf is actually preferred.

[SziKayLeung]

Thank you @Yuyao1025, I agree it's the bug in line 46 and 47. The bug was fixed by removing the word "gzip" after open on line 47. So the following code works for anyone with the same issue:

if args.gtf[-3:] == '.gz': ginf = gzip.open(args.gtf)
else: ginf = open(args.gtf)

and thank you @abayega for commenting!