Comments (3)
Possible solution. Add this into the YAML file. Modify the create_populate_file.py
.
- Add the
BIOLOGICAL_REPLICATE_IDENTIFIER: 1
into theBIOLOGICAL_REPLICATE
part of the YAML file. - Then, add the same identifier entry in the
PERTURBATION
part. - This identifier will only be used to link user inputs (biological replicates and perturbations) but will have no effect on database's identifiers (primary keys).
- Biological replicate identifiers can be generated automatically by the code, so the user just needs to provide that number into the perturbation part of the YAML file.
Code:
BIOLOGICAL_REPLICATE:
- BIOLOGICAL_REPLICATE_IDENTIFIER: 1
NAME:
value: _name_
## description: Name of the biological replicate
PERTURBATION:
- BIOLOGICAL_REPLICATE_IDENTIFIER: _id_
## description: Indicate the BR name you provided before.
from bacterial_growth.
👍
from bacterial_growth.
Related change to be made:
--num_studies
: I am using the argument as a boolean, so num_ is misleading
from bacterial_growth.
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