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annom

anomaly detection support for synthesis in pytorch

cookiecutter-pypackage

Cookiecutter template for a Python package.

counterfactualms

counterfactuals for magnetic resonance images of multiple sclerosis

dicom-numpy

Properly generate a 3D numpy array from a set of DICOM files.

dotfiles

econml

intensity-normalization

normalize the intensities of various MR image modalities

jcreinhold

jcreinhold.github.io

lesion-metrics

metrics for evaluating lesion segmentations

lesionqc

calculate quality metrics for lesion segmentation results

msseg

Multiple sclerosis T2 lesion segmentation

niftidataset

pytorch dataset class for reading and transforming NIfTI files

nimanifold

nonlinear dimensionality reduction exploration for medical image datasets

niwidgets

Neuroimaging widgets for jupyter notebooks

numpy

The fundamental package for scientific computing with Python.

owl

Owl - OCaml Scientific Computing @ http://ocaml.xyz

owlppl

Final Year Project - A probabilisitic programming language in OCaml

pymedio

read arbitrary medical image formats with python

pyrobex

python bindings for ROBEX brain extraction

replica

synthesize MR brain images via a random forest

selfsupervised3d

methods to support self-supervised learning with 3D images

synthit

an amalgam of (non-DNN-based) MR brain synthesis routines

synthqc

quality analysis/control for synthesis

synthtorch

deep neural network-based image translation/synthesis

tiramisu-brulee

A 2D and 3D PyTorch implementation of the Tiramisu CNN

torchio

TorchIO: medical imaging for deep learning.

uncertaintorch

uncertainty-based synthesis and segmentation in pytorch