Joseph Monaco's Projects
Script to add website-archive of a mindmap exported from iThoughts to a local web root.
Script workflow for using Skim/BibDesk on OS X to extract Adobe-style PDF annotations into beautiful markdown output.
Geometric SVG-based environments for 2D spatial simulations and mazes
LaTeX source for my curriculum vitae.
Extensible python-based declarative neuronal network simulator with interactive visualization.
This is a copy of the f.lux for iOS Xcode project that was briefly available for sideloading.
Statistical and biophysical modeling and analysis code for Tabuchi, Monaco, et al. (2018).
GeNN is a GPU-enhanced Neuronal Network simulation environment based on code generation for Nvidia CUDA.
A bash script for creating LaTeX diffs from git revisions
Model source code: "Modular Realignment of Entorhinal Grid Cell Activity as a Basis for Hippocampal Remapping"
Basic python module for reading a few Neuralynx file types
Location-Controlled Oscillator Model. As presented at SfN 2014.
Animation engine for explanatory math videos
A lightweight Markdown-based wiki system. Current status: abandoned.
LaTeX manuscript template based on a Nature Neuroscience submission
Neural swarming controller models for multi-agent and single-entity simulations.
Param: Make your Python code clearer and more reliable by declaring Parameters
A script to batch rename PDF files based on metadata/XMP title and author
Flexibly display colorful messages to the shell, logfiles, and notifications.
Paper on using GeNN for simulating very large-scale models
A large bag of data analysis tools that have proven useful over time.
Fast, convenient bash scripts in any directory.
Source code for rodent head-scanning and place-field analysis presented in Monaco et al. (2014).
Neural data analysis framework for single-unit spatial experiments [WIP]
Automatic heritable parameter specification framework
Adaptive kernel-based spatial maps for neural spike-trajectory data.
Persistent self-documenting context for scientific computing and data analysis
An ack-like recursive grep of source code trees that is also a simple python script.
Common tools and shared definitions that support my other packages